Difference in Differences with Multiple Periods, website: https://bcallaway11.github.io/did

TRAjectory-based Differential Expression analysis for SEQuencing data

User-friendly extensions of the DrugBank database

A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression

Training and evaluating a variational autoencoder for pan-cancer gene expression data

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

An unsupervised transfer learning approach for rare disease transcriptomics

Project code for BioHackathon Europe 2022.

Identifying external communication signals using single-cell transcriptomics data

Measuring agreement of lists