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Commits on Aug 29, 2022

• Merge pull request LinearFold#11 from lianghuang3/master

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• adding the missing shared.h

  

  Liang Huang

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  Liang Huang

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Commits on Aug 21, 2022

• Merge pull request LinearFold#9 from lianghuang3/master

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• eliminate redundant conversion from CONTRAfold to Vienna encoding; ~10% speedup in LF-V

  

  Liang Huang

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  Liang Huang

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Commits on Aug 20, 2022

• turning off never-used dangle for multi; check j boundary condition in M=P (j<n-6) and M2=M+P (j<n-1)

  

  Liang Huang

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  Liang Huang

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Commits on Aug 18, 2022

• Update README.md

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Commits on Aug 16, 2022

• Merge pull request LinearFold#8 from sizhen/patch-1

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• LinearFoldEval.cpp to LinearFoldEval.h

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Commits on Aug 14, 2022

• Merge branch 'master' of github.com:LinearFold/LinearFold

  

  Liang Huang

  authored and

  Liang Huang

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• LinearFoldEval should be cpp not h

  

  Liang Huang

  authored and

  Liang Huang

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Commits on Aug 13, 2022

• README

  

  Liang Zhang

  authored and

  Liang Zhang

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• README

  

  Liang Zhang

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  Liang Zhang

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• dangles in README

  

  Liang Huang

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  Liang Huang

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• dangling ends option: short_name and only support 0 or 2

  

  Liang Huang

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  Liang Huang

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• dangle ends

  

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• dangle ends

  

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• dangle ends

  

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• dangling end

  

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• dangling end

  

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• dangling end

  

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• dangle ends

  

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  authored and

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Commits on Aug 8, 2022

• python3

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Commits on Jan 9, 2022

• minor

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• minor

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• minor

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• -f flag

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• gflags

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Commits on Dec 30, 2021

• Fasta input

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Commits on Dec 17, 2021

• Delete rna.ps

  LinearFold

  authored
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• Delete gflags.pyc

  LinearFold

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Commits on Jun 7, 2021

• SHAPE

  

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• SHAPE

  

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• SHAPE reference

  

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Commits on Jun 6, 2021

• SHAPE

  

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