test.yml

# The purpose of this workflow is to execute `R CMD check` on different R and OS version.
#
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          # some dependencies can't be installed on windows or mac OS. We only support Linux. Period.
          # - { os: macOS-latest, r: "release" }
          # - { os: windows-latest, r: "release" }
          # TODO devel currently fails because a dependency can't be installed. Hopefully this gets fixed.
          # - { os: ubuntu-latest, r: "devel", http-user-agent: "release" }
          - { os: ubuntu-latest, r: "release" }
          - { os: ubuntu-latest, r: "oldrel-1" }

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes
      CIBERSORTX_EMAIL: ${{ secrets.CIBERSORTX_EMAIL }}
      CIBERSORTX_TOKEN: ${{ secrets.CIBERSORTX_TOKEN }}

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::rcmdcheck
          needs: check

      - uses: r-lib/actions/check-r-package@v2
        with:
          upload-snapshots: true