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Unable to find *.pt files for region_4096_pretraining #13
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Hi @Richarizardd, the *.pt files in
Whereas I am looking for inputs to the 2nd stage pre-training which I believe are a list of *.pt files each containing tensor of dimension |
Hi @ramprs21 - apologies for the confusion. The previous link refers to the already pre-extracted "region-level" feature embeddings for each slide in TCGA. Regarding the *.pt files for hierarchical pretraining, it is logistically difficult at the moment to make available all |
Thank you @Richarizardd. Could you please update here whenever you make the 1st stage features available? Thank you :) |
Hi @ramprs21 @Richarizardd , For the hierarchical pretraining (2nd stage), will the training time be much faster than the 1st stage since one region can now be converted into [256,384] which, when trained, will be reshaped again into [1,384,16,16]? |
Am I right in expecting the patch level feature *.pt files (433779 files each containing 256 x 384 tensor) used for pretraining the second stage of HIPT to be present in the
HIPT/3-Self-Supervised-Eval/embeddings_patch_lib/
directory?Currently, I only see the following pickle files in that directory.
Thanks in advance.
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