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training-resources Public
Forked from NEUBIAS/training-resourcesResources for teaching/preparing to teach bioimage analysis
Python Other UpdatedDec 3, 2024 -
minflux-analysis Public
Forked from jkfindeisen/minflux-analysisSome tools to work with Minflux microscopy data
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augmend Public
Forked from stardist/augmendsimple package for augmentation of n-dimensional arrays
Python UpdatedSep 4, 2023 -
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npc_assembly_Otsuka_2022 Public
Code associated to the publication "A quantitative map of nuclear pore assembly reveals two distinct mechanisms" Otsuka et al. 2022, Nature.
HTML MIT License UpdatedJul 10, 2022 -
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teaching-dl-course-2022 Public
Forked from kreshuklab/teaching-dl-course-2022Materials for the EMBL Deep Learning course
Jupyter Notebook UpdatedJan 21, 2022 -
visiview-scripts Public
Forked from fmi-faim/visiview-scriptsA collection of macros for the VisiView acquisition software
Python UpdatedJan 17, 2022 -
MicroscopeRemoteControl Public
Forked from Ishii-CREST/MicroscopeRemoteControlAbout Microscope Remote Control is an application to control a microscope remotely via network
JavaScript MIT License UpdatedOct 20, 2021 -
fcsfiles Public
Forked from cgohlke/fcsfilesRead fluorescence correlation spectroscopy (FCS) data files. Forked from https://pypi.org/project/fcsfiles
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 6, 2021 -
stardist Public
Forked from stardist/stardistStarDist - Object Detection with Star-convex Shapes
C BSD 3-Clause "New" or "Revised" License UpdatedMay 10, 2021 -
list-of-update-sites Public
Forked from imagej/list-of-update-sitesThe update sites ImageJ knows about automatically
Python UpdatedMar 16, 2021 -
cytosim Public
Forked from SergeDmi/cytosimCytosim is a cytoskeleton simulation engine
C++ GNU General Public License v3.0 UpdatedSep 26, 2019 -
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tutorials Public
Forked from imagej/tutorialsImageJ programming examples
Jupyter Notebook UpdatedOct 15, 2018 -
CommMicroscope Public
Forked from miura/CommMicroscopeFiji code to read-write registry and run macro on new files of directory
Java UpdatedAug 23, 2017 -
ConfocalGN Public
Forked from SergeDmi/ConfocalGNGenerates simulated confocal data from a ground truth signal
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ch.psi.imagej.hdf5 Public
Forked from paulscherrerinstitute/ch.psi.imagej.hdf5ImageJ HDF5 Plugin
Java UpdatedApr 21, 2015 -
cecog Public
Forked from CellCognition/cecogA fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
Python Other UpdatedJun 30, 2014 -
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CellProfiler Public
Forked from CellProfiler/CellProfilerCellProfiler is open-source cellular image analysis software.
Python Other UpdatedSep 1, 2013 -
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GLCM2 Public
Forked from miura/GLCM2calculates GLCM, to make it friendly for scripting.
Java UpdatedApr 22, 2013