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Running Mineotaur in Docker

Clone this repository, and build the Mineotaur Docker image:

docker build -t mineotaur .

Create a Mineotaur data directory, e.g. /mineotaur-data, containing the properties file:

  • XXX.input

If the feature data is not provided by OMERO then also create the sample and label files:

  • XXX_sample.tsv
  • XXX_labels.tsv

Run the Docker image to create the Mineotaur data. The Mineotaur data directory must be mounted under /mineotaur, generated data will be written to a subdirectory in this directory named after the input screen:

docker run -v /mineotaur-data:/mineotaur mineotaur -import XXX.input

If the feature data is not provided by OMERO:

docker run -v /mineotaur-data:/mineotaur mineotaur \
    -import XXX.input XXX_sample.tsv XXX_labels.tsv

You should see several log messages, ending with

INFO: Database generation finished. Start Mineotaur instance with -start YYY

where YYY is the name of the analysed screen. Run the Mineotaur web application, substituting YYY:

docker run -v /mineotaur-data:/mineotaur --start YYY

Mineotaur should be listening on port 8080 of the container.