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Achievements

Achievement: YOLOAchievement: Pair Extraordinairex2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3Achievement: Starstruck

Achievements

Achievement: YOLOAchievement: Pair Extraordinairex2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3Achievement: Starstruck

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  • torchtree Public

    Forked from 4ment/torchtree

    A probabilistic framework in PyTorch for phylogenetic models

    Jupyter Notebook GNU General Public License v3.0 Updated Oct 30, 2024

  • SCOPE Public

    Forked from SrivatsanLab/SCOPE
    Python Updated Aug 6, 2024

  • pplacer Public

    Phylogenetic placement and downstream analysis

    OCaml 75 18 GNU General Public License v3.0 Updated Jul 17, 2024

  • jax Public

    Forked from jax-ml/jax

    Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

    Python Apache License 2.0 Updated Jun 15, 2024

  • teaching Public

    My teaching materials.

    HTML 2 1 Other Updated May 2, 2024

  • for-dms-viz Public

    Updated Mar 31, 2024

  • iqtree2 Public

    Forked from iqtree/iqtree2

    NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

    C++ GNU General Public License v2.0 Updated Nov 6, 2023

  • patchworklib Public

    Forked from ponnhide/patchworklib

    Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

    Python GNU General Public License v3.0 Updated Dec 22, 2022

  • blackjax Public

    Forked from blackjax-devs/blackjax

    BlackJAX is a sampling library designed for ease of use, speed and modularity.

    Python Apache License 2.0 Updated Sep 24, 2022

  • libsbn Public

    Forked from phylovi/bito

    Python-interface C++ library for variational Bayesian phylogenetics

    C++ GNU General Public License v3.0 Updated Aug 28, 2020

  • treeflow Public

    Forked from christiaanjs/treeflow
    Jupyter Notebook Updated Jun 19, 2020

  • plotnine Public

    Forked from has2k1/plotnine

    A grammar of graphics for Python

    Python GNU General Public License v2.0 Updated Jun 17, 2020

  • tfp-noodling Public

    Updated Jun 12, 2020

  • wiki Public

    Forked from FredHutch/wiki

    SciWiki: Collective KnowledgeBase for Scientific Data and Use

    HTML Other Updated Jun 11, 2020

  • SONIA Public

    Forked from statbiophys/SONIA

    Infer selection pressures on features of amino acid CDR3 sequences.

    Python GNU General Public License v3.0 Updated Jan 22, 2020

  • cozy-demo Public

    A demonstration setup showing a comfortable shell configuration

    Shell 1 Updated Jan 10, 2020

  • beagle-lib Public

    Forked from beagle-dev/beagle-lib

    general purpose library for evaluating the likelihood of sequence evolution on trees

    C++ GNU Lesser General Public License v3.0 Updated Dec 20, 2019

  • PhyloInfer Public

    Forked from zcrabbit/PhyloInfer

    Developing efficient Bayesian phylogenetic inference methods

    Python Updated Dec 13, 2019

  • pybind11 Public

    Forked from pybind/pybind11

    Seamless operability between C++11 and Python

    C++ Other Updated Nov 12, 2019

  • astronaut-requests Public

    Demo repository combining Conda, Docker, and Travis

    Dockerfile 1 Updated Nov 6, 2019

  • cowsay-test Public

    Dockerfile 4 Updated Nov 6, 2019

  • compare_selection_models_2019 Public

    Forked from statbiophys/compare_selection_models_2019
    Python GNU General Public License v3.0 Updated Oct 16, 2019

  • research Public

    My research statement.

    TeX 1 1 Updated Sep 20, 2019

  • ete Public

    Forked from etetoolkit/ete

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python GNU General Public License v3.0 Updated Jul 2, 2019

  • gohellohmsbeagle Public

    The 'hello.cpp' example in the libhmsbeagle repository, translated to Go.

    Go Updated Mar 25, 2019

  • OLGA Public

    Forked from statbiophys/OLGA

    Compute generation probabilities of CDR3 amino acid and nucleotide sequences

    Python GNU General Public License v3.0 Updated Jul 13, 2018

  • pubtcrs Public

    Forked from phbradley/pubtcrs

    This repository contains C++ source code for TCR clustering and correlation analysis

    C++ MIT License Updated May 16, 2018

  • baby-name-big-data Public

    Jupyter Notebook 1 Updated May 12, 2018

  • SPURF Public

    Forked from krdav/SPURF
    Python GNU General Public License v3.0 Updated Mar 18, 2018

  • sbreview Public

    Systematic biology review article on phylogenetics and the human microbiome; associated with LIRMM conference

    TeX 2 Updated Mar 16, 2018