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Commits on Feb 16, 2024

• Improve image compare code (scverse#2860)

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• py 3.12 suport (scverse#2863)

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• Convert string input on calculate qc metrics into collection for convenience (scverse#2859)

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• Rename mask parameters (scverse#2857)

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Commits on Feb 15, 2024

• Minimum dependency test job (scverse#2816)

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• Support Dask in highly_variable_genes (scverse#2809)

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• Turn on code cov patch annotations (scverse#2848)

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• sc.pp.highly_variable_genes(adata, flavor="seurat_v3") consistency improvement and implementation discussion (scverse#2792)

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• Update log handling (scverse#2855)

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Commits on Feb 13, 2024

• Add cell_ranger consistency test, fix test file extensions (scverse#2851)

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• Better docs for percent_top (scverse#2849)

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• [pre-commit.ci] pre-commit autoupdate (scverse#2850)

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• Ignore dask dataframe warning in tests (scverse#2852)

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Commits on Feb 12, 2024

• Move scrublet out of external (scverse#2703)

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Commits on Feb 9, 2024

• Fix some plot warnings (scverse#2844)

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• Fix multithreading helper (scverse#2845)

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Commits on Feb 8, 2024

• Prevent oversubscription during tests (scverse#2843)

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Commits on Feb 6, 2024

• [pre-commit.ci] pre-commit autoupdate (scverse#2841)

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Commits on Feb 2, 2024

• Fix pytest 8 compat (scverse#2838)

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Commits on Jan 29, 2024

• Fix tests for pytest-8 (scverse#2837)

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Commits on Jan 26, 2024

• start fixing metric tests (scverse#2705)

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• Run ci on release branch (scverse#2834)

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• Fix for _validate_palette for old numpy versions, prepare 1.9.8 hotfix release (scverse#2832)

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• Prepare 1.9.8, stop ignoring citation errors (scverse#2831)

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Commits on Jan 25, 2024

• Prepare 1.9.7 release (scverse#2826)

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Commits on Jan 23, 2024

• [pre-commit.ci] pre-commit autoupdate (scverse#2820)

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Commits on Jan 22, 2024

• Refactoring t-test default warning (scverse#2798)

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Commits on Jan 18, 2024

• Revert "Use version helper everywhere" (scverse#2818)

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• Use version helper everywhere (scverse#2817)

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Commits on Jan 16, 2024

• Test full Dask support for log1p, normalize_per_cell, filter_cells/filter_genes (scverse#2814)

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• [pre-commit.ci] pre-commit autoupdate (scverse#2811)

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Commits on Jan 15, 2024

• Fix hvg warnings (scverse#2810)

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• Add rtd-sphinx-search (scverse#2805)

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Commits on Jan 9, 2024

• [pre-commit.ci] pre-commit autoupdate (scverse#2799)

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• Rely on scanpydoc for prose return sections (scverse#2800)

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