Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on May 26, 2021

• Merge branch 'master' of github.com:mchowdh200/samplot-ml

  mchowdh200

  committed
  ec5dab5

  Copy full SHA for ec5dab5

• remove .pylintrc from tracking

  mchowdh200

  committed
  3035613

  Copy full SHA for 3035613

• Create LICENSE

  mchowdh200

  authored
  389b83d

  Copy full SHA for 389b83d

• add citation in readme.

  mchowdh200

  committed
  1ab5f04

  Copy full SHA for 1ab5f04

• add doi badge for git repo

  mchowdh200

  committed
  9f11d6c

  Copy full SHA for 9f11d6c

• update gitignore.

  mchowdh200

  committed
  fb62227

  Copy full SHA for fb62227

• clean up old files, and move to another repository for posterity.

  mchowdh200

  committed
  6bd97c4

  Copy full SHA for 6bd97c4

• change image link

  mchowdh200

  committed
  7b41b65

  Copy full SHA for 7b41b65

• clean up old figures, added example samplot image

  mchowdh200

  committed
  82b4493

  Copy full SHA for 82b4493

• updated readme

  mchowdh200

  committed
  dd46a93

  Copy full SHA for dd46a93

• renamed filter_predictions.smk to be consistent with the config file.

  mchowdh200

  committed
  e92c5e0

  Copy full SHA for e92c5e0

• use 'nan' to signal missing values for regions without prediction.

  mchowdh200

  committed
  0a91394

  Copy full SHA for 0a91394

• use wildcard instead of input[0]

  mchowdh200

  committed
  00fd892

  Copy full SHA for 00fd892

• forgot to uncomment with block

  mchowdh200

  committed
  e175dea

  Copy full SHA for e175dea

• forgot colon

  mchowdh200

  committed
  be00b64

  Copy full SHA for be00b64

• try making image gen rules ... rules and not checkpoints.

  mchowdh200

  committed
  c44e843

  Copy full SHA for c44e843

• remove -e flag in gargs call for crop script.

  mchowdh200

  committed
  2f0fe53

  Copy full SHA for 2f0fe53

• just use mkdir -p instead of manually checking.

  mchowdh200

  committed
  ea518c3

  Copy full SHA for ea518c3

• enable conda environment for generate image rule.

  mchowdh200

  committed
  3a2034e

  Copy full SHA for 3a2034e

Commits on May 25, 2021

• change dependency to just htslib

  mchowdh200

  committed
  daa668b

  Copy full SHA for daa668b

• Merge branch 'master' of github.com:mchowdh200/samplot-ml

  mchowdh200

  committed
  4a258aa

  Copy full SHA for 4a258aa

• modified annotate script to keep 0/0 entries.

  mchowdh200

  committed
  06fd022

  Copy full SHA for 06fd022

• add some other deps to the samplot environmen.

  mchowdh200

  committed
  b0e5519

  Copy full SHA for b0e5519

Commits on Apr 7, 2021

• fix / in aws s3 ls command

  

  Ubuntu

  committed
  63b5bc2

  Copy full SHA for 63b5bc2

• Change bam bucket in create_config.sh

  

  Ubuntu

  committed
  a8bc542

  Copy full SHA for a8bc542

• fixed samplot install pip command

  

  Ubuntu

  committed
  b54215a

  Copy full SHA for b54215a

• update samplot/pysam install in snakemake pipeline

  

  Ubuntu

  committed
  09594f7

  Copy full SHA for 09594f7

Commits on Mar 30, 2021

• add actual annotation to annotate.py

  mchowdh200

  committed
  93e8386

  Copy full SHA for 93e8386

• misnamed variable.

  mchowdh200

  committed
  41f1fbe

  Copy full SHA for 41f1fbe

• fix script location

  mchowdh200

  committed
  378c1c8

  Copy full SHA for 378c1c8

• fix bcftools view command

  mchowdh200

  committed
  53bc59e

  Copy full SHA for 53bc59e

• add line to create output directory if not present.

  mchowdh200

  committed
  be5352c

  Copy full SHA for be5352c

• add annotate rule/script

  mchowdh200

  committed
  654c2df

  Copy full SHA for 654c2df

• need zlib1g-dev for htslib

  mchowdh200

  committed
  1c1881b

  Copy full SHA for 1c1881b

• Just use an older version of samplot to ensure same conditions.

  mchowdh200

  committed
  3e3eff0

  Copy full SHA for 3e3eff0

Pagination

Previous

Next