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Commits on Sep 11, 2024

• fix: exclude ambiguous bases from confidence scoring calculation

  

  Matthew Colpus

  committed
  ee54d53

Commits on Sep 7, 2024

• Fix an issue causing k2 inspect to not write to specified output file

  ch4rr0

  committed
  4bab089

Commits on Sep 5, 2024

• Fix an issue causing freed space to be incorrectly reported

  ch4rr0

  committed
  85c8c30

Commits on Sep 4, 2024

• Add .pm files to to list of scripts to be installed

  ch4rr0

  committed
  756f67e

Commits on Sep 3, 2024

• Remove the masking continuation feature, it will be added to the k2 wrapper

  ch4rr0

  committed
  77be10b

• Fix backwards incompatible change in k2 script

  ch4rr0

  committed
  8e40912

• Fix undefined behavior in kraken2-inspect

  ch4rr0

  committed
  2fa1ca9

• Fix compiler warnings

  ch4rr0

  committed
  30c508b

• Add top level Makefile and modify src/Makefile to work with pmake

  ch4rr0

  committed
  56efefc

Commits on Aug 26, 2024

• Speed up file deletion and remove empty directories

  ch4rr0

  committed
  7078d64

Commits on Aug 21, 2024

• Major improvements to performance and reliability

  ch4rr0

  committed
  a7d6130

Commits on Aug 7, 2024

• Add performance improvements to add-to-library subcommand

  ch4rr0

  committed
  3ae0ed9

• Add --threads parameter to add-to-library subcommand

  ch4rr0

  committed
  183929a

• Do not implicilty enable masking continuation

  ch4rr0

  committed
  38ef2af

• Performance and quality fo life improvements to k2 script

  ch4rr0

  committed
  8f9008a

Commits on Jul 17, 2024

• Guard against partial writes when fetching data from FTP

  ch4rr0

  committed
  a584a52

Commits on Mar 22, 2024

• Make it possible for k2mask to resume masking

  ch4rr0

  committed
  4cbdc5f

Commits on Nov 2, 2023

• Use HTTP, with FTP fallback, for downloading most library files, miscellaneous fixes and improvements

  ch4rr0

  committed
  acc2248

Commits on Jun 7, 2023

• Add masker to gitignore

  DerrickWood

  committed
  8f82a7d

Commits on Jun 6, 2023

• Copyright update

  DerrickWood

  committed
  383ef55

• Changes to docs for 2.1.3

  DerrickWood

  committed
  9a14eea

• Prep installer for 2.1.3

  DerrickWood

  committed
  3aa38c2

• Update Changelog for 2.1.3

  DerrickWood

  committed
  b6c4634

Commits on May 22, 2023

• Merge pull request DerrickWood#637 from miguelpmachado/hotfix/assembly_ncbi_url_check

  Show description for 84e851b
  DerrickWood

  authored
  84e851b

Commits on May 7, 2023

• Fix crash when cleaning up taxonomy files; add support for masking special DBs

  ch4rr0

  committed
  013c36f

Commits on Mar 14, 2023

• Merge pull request DerrickWood#697 from ch4rr0/python_wrapper

  Show description for df20a8f
  BenLangmead

  authored
  df20a8f

Commits on Mar 9, 2023

• Merge pull request DerrickWood#675 from ch4rr0/masking_pr

  Show description for 7994cc8
  DerrickWood

  authored
  7994cc8

• Fix issues with file downloads

  ch4rr0

  committed
  07041e8

Commits on Mar 2, 2023

• Rename OMPFLAG to KRAKEN2_SKIP_FOPENMP

  ch4rr0

  committed
  b470c45

Commits on Feb 27, 2023

• Merge pull request DerrickWood#689 from ch4rr0/python_wrapper

  Show description for c005386
  DerrickWood

  authored
  c005386

• Merge pull request DerrickWood#685 from ch4rr0/reproducible_builds

  Show description for 4162ccc
  DerrickWood

  authored
  4162ccc

Commits on Feb 21, 2023

• Python wrapper for calling kraken2 binaries

  ch4rr0

  committed
  eaa0f8c

Commits on Feb 9, 2023

• Process manifest files in a deterministic way

  ch4rr0

  committed
  3b70a44

Commits on Feb 4, 2023

• Keep command line consistent with segmasker

  ch4rr0

  committed
  065a289

• Quality-of-life improvements

  ch4rr0

  committed
  928879e

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