Command-line program to download videos from YouTube.com and other video sites

This is the Personality Core for GLaDOS, the first steps towards a real-life implementation of the AI from the Portal series by Valve.

Tools to process and analyze deep sequencing data.

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

Efficient pythonic random access to fasta subsequences

User friendly and accurate binder design pipeline

Database for the VCV Library

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure.

This is the repository for the Stmol project, a Streamlit component that uses py3Dmol to render molecules.

Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.

A KiCad plugin project to create gerber files and zip files.

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

A library to assist with a variety of -omic analyses. Included are tools for proteomics, transcriptomics, and genomics.

This is a Python tool to employ stratified sampling or treatment randomization with uneven numbers in some strata using pandas. Mainly thought with RCTs in mind, it also works for any other scenari…

Python library for analyzing mass spectrometry proteomics data.

RAG application to answer questions about PDF documents using LLMs.

Snakemake pipeline for quantification of deep mutational scanning (DMS) data from overlapping paired-end reads in fastq files from amplicon sequencing

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

Python interface to ensembl reference genome metadata (exons, transcripts, etc...)