RAFT: Reusable Accelerated Functions and Tools

Resources

• RAFT Reference Documentation: API Documentation.
• RAFT Getting Started: Getting started with RAFT.
• Build and Install RAFT: Instructions for installing and building RAFT.
• RAPIDS Community: Get help, contribute, and collaborate.
• GitHub repository: Download the RAFT source code.
• Issue tracker: Report issues or request features.

Overview

RAFT contains fundamental widely-used algorithms and primitives for data science and machine learning. The algorithms are CUDA-accelerated and form building-blocks for rapidly composing analytics.

By taking a primitives-based approach to algorithm development, RAFT

• accelerates algorithm construction time
• reduces the maintenance burden by maximizing reuse across projects, and
• centralizes core reusable computations, allowing future optimizations to benefit all algorithms that use them.

While not exhaustive, the following general categories help summarize the accelerated functions in RAFT:

Category	Examples
Data Formats	sparse & dense, conversions, data generation
Dense Operations	linear algebra, matrix and vector operations, reductions, slicing, norms, factorization, least squares, svd & eigenvalue problems
Sparse Operations	linear algebra, eigenvalue problems, slicing, norms, reductions, factorization, symmetrization, components & labeling
Spatial	pairwise distances, nearest neighbors, neighborhood graph construction
Basic Clustering	spectral clustering, hierarchical clustering, k-means
Solvers	combinatorial optimization, iterative solvers
Statistics	sampling, moments and summary statistics, metrics
Tools & Utilities	common utilities for developing CUDA applications, multi-node multi-gpu infrastructure

All of RAFT's C++ APIs can be accessed header-only and optional pre-compiled shared libraries can 1) speed up compile times and 2) enable the APIs to be used without CUDA-enabled compilers.

In addition to the C++ library, RAFT also provides 2 Python libraries:

• pylibraft - lightweight low-level Python wrappers around RAFT's host-accessible "runtime" APIs.
• raft-dask - multi-node multi-GPU communicator infrastructure for building distributed algorithms on the GPU with Dask.

Getting started

RAPIDS Memory Manager (RMM)

RAFT relies heavily on RMM which eases the burden of configuring different allocation strategies globally across the libraries that use it.

Multi-dimensional Arrays

The APIs in RAFT currently accept raw pointers to device memory and we are in the process of simplifying the APIs with the mdspan multi-dimensional array view for representing data in higher dimensions similar to the ndarray in the Numpy Python library. RAFT also contains the corresponding owning mdarray structure, which simplifies the allocation and management of multi-dimensional data in both host and device (GPU) memory.

The mdarray forms a convenience layer over RMM and can be constructed in RAFT using a number of different helper functions:

#include <raft/core/device_mdarray.hpp>

int n_rows = 10;
int n_cols = 10;

auto scalar = raft::make_device_scalar<float>(handle, 1.0);
auto vector = raft::make_device_vector<float>(handle, n_cols);
auto matrix = raft::make_device_matrix<float>(handle, n_rows, n_cols);

C++ Example

Most of the primitives in RAFT accept a raft::device_resources object for the management of resources which are expensive to create, such CUDA streams, stream pools, and handles to other CUDA libraries like cublas and cusolver.

The example below demonstrates creating a RAFT handle and using it with device_matrix and device_vector to allocate memory, generating random clusters, and computing pairwise Euclidean distances:

#include <raft/core/device_resources.hpp>
#include <raft/core/device_mdarray.hpp>
#include <raft/random/make_blobs.cuh>
#include <raft/distance/distance.cuh>

raft::device_resources handle;

int n_samples = 5000;
int n_features = 50;

auto input = raft::make_device_matrix<float>(handle, n_samples, n_features);
auto labels = raft::make_device_vector<int>(handle, n_samples);
auto output = raft::make_device_matrix<float>(handle, n_samples, n_samples);

raft::random::make_blobs(handle, input.view(), labels.view());

auto metric = raft::distance::DistanceType::L2SqrtExpanded;
raft::distance::pairwise_distance(handle, input.view(), input.view(), output.view(), metric);

It's also possible to create raft::device_mdspan views to invoke the same API with raw pointers and shape information:

#include <raft/core/device_resources.hpp>
#include <raft/core/device_mdspan.hpp>
#include <raft/random/make_blobs.cuh>
#include <raft/distance/distance.cuh>

raft::device_resources handle;

int n_samples = 5000;
int n_features = 50;

float *input;
int *labels;
float *output;

...
// Allocate input, labels, and output pointers
...

auto input_view = raft::make_device_matrix_view(input, n_samples, n_features);
auto labels_view = raft::make_device_vector_view(labels, n_samples);
auto output_view = raft::make_device_matrix_view(output, n_samples, n_samples);

raft::random::make_blobs(handle, input_view, labels_view);

auto metric = raft::distance::DistanceType::L2SqrtExpanded;
raft::distance::pairwise_distance(handle, input_view, input_view, output_view, metric);

Python Example

The pylibraft package contains a Python API for RAFT algorithms and primitives. pylibraft integrates nicely into other libraries by being very lightweight with minimal dependencies and accepting any object that supports the __cuda_array_interface__, such as CuPy's ndarray. The number of RAFT algorithms exposed in this package is continuing to grow from release to release.

The example below demonstrates computing the pairwise Euclidean distances between CuPy arrays. Note that CuPy is not a required dependency for pylibraft.

import cupy as cp

from pylibraft.distance import pairwise_distance

n_samples = 5000
n_features = 50

in1 = cp.random.random_sample((n_samples, n_features), dtype=cp.float32)
in2 = cp.random.random_sample((n_samples, n_features), dtype=cp.float32)

output = pairwise_distance(in1, in2, metric="euclidean")

The output array in the above example is of type raft.common.device_ndarray, which supports cuda_array_interface making it interoperable with other libraries like CuPy, Numba, and PyTorch that also support it. CuPy supports DLPack, which also enables zero-copy conversion from raft.common.device_ndarray to JAX and Tensorflow.

Below is an example of converting the output pylibraft.device_ndarray to a CuPy array:

cupy_array = cp.asarray(output)

And converting to a PyTorch tensor:

import torch

torch_tensor = torch.as_tensor(output, device='cuda')

When the corresponding library has been installed and available in your environment, this conversion can also be done automatically by all RAFT compute APIs by setting a global configuration option:

import pylibraft.config
pylibraft.config.set_output_as("cupy")  # All compute APIs will return cupy arrays
pylibraft.config.set_output_as("torch") # All compute APIs will return torch tensors

You can also specify a callable that accepts a pylibraft.common.device_ndarray and performs a custom conversion. The following example converts all output to numpy arrays:

pylibraft.config.set_output_as(lambda device_ndarray: return device_ndarray.copy_to_host())

pylibraft also supports writing to a pre-allocated output array so any __cuda_array_interface__ supported array can be written to in-place:

import cupy as cp

from pylibraft.distance import pairwise_distance

n_samples = 5000
n_features = 50

in1 = cp.random.random_sample((n_samples, n_features), dtype=cp.float32)
in2 = cp.random.random_sample((n_samples, n_features), dtype=cp.float32)
output = cp.empty((n_samples, n_samples), dtype=cp.float32)

pairwise_distance(in1, in2, out=output, metric="euclidean")

Installing

RAFT itself can be installed through conda, Cmake Package Manager (CPM), pip, or by building the repository from source. Please refer to the build instructions for more a comprehensive guide on installing and building RAFT and using it in downstream projects.

Conda

The easiest way to install RAFT is through conda and several packages are provided.

• libraft-headers RAFT headers
• libraft-nn (optional) contains shared libraries for the nearest neighbors primitives.
• libraft-distance (optional) contains shared libraries for distance primitives.
• pylibraft (optional) Python wrappers around RAFT algorithms and primitives.
• raft-dask (optional) enables deployment of multi-node multi-GPU algorithms that use RAFT raft::comms in Dask clusters.

Use the following command to install all of the RAFT packages with conda (replace rapidsai with rapidsai-nightly to install more up-to-date but less stable nightly packages). mamba is preferred over the conda command.

mamba install -c rapidsai -c conda-forge -c nvidia raft-dask pylibraft

You can also install the libraft-* conda packages individually using the mamba command above.

After installing RAFT, find_package(raft COMPONENTS nn distance) can be used in your CUDA/C++ cmake build to compile and/or link against needed dependencies in your raft target. COMPONENTS are optional and will depend on the packages installed.

Pip

pylibraft and raft-dask both have experimental packages that can be installed through pip:

pip install pylibraft-cu11 --extra-index-url=https://pypi.ngc.nvidia.com
pip install raft-dask-cu11 --extra-index-url=https://pypi.ngc.nvidia.com

Cmake & CPM

RAFT uses the RAPIDS-CMake library, which makes it simple to include in downstream cmake projects. RAPIDS CMake provides a convenience layer around CPM.

After installing rapids-cmake in your project, you can begin using RAFT by placing the code snippet below in a file named get_raft.cmake and including it in your cmake build with include(get_raft.cmake). This will make available several targets to add to configure the link libraries for your artifacts.

set(RAFT_VERSION "22.12")
set(RAFT_FORK "rapidsai")
set(RAFT_PINNED_TAG "branch-${RAFT_VERSION}")

function(find_and_configure_raft)
  set(oneValueArgs VERSION FORK PINNED_TAG COMPILE_LIBRARIES)
  cmake_parse_arguments(PKG "${options}" "${oneValueArgs}"
                            "${multiValueArgs}" ${ARGN} )

  #-----------------------------------------------------
  # Invoke CPM find_package()
  #-----------------------------------------------------

  rapids_cpm_find(raft ${PKG_VERSION}
          GLOBAL_TARGETS      raft::raft
          BUILD_EXPORT_SET    projname-exports
          INSTALL_EXPORT_SET  projname-exports
          CPM_ARGS
          GIT_REPOSITORY https://github.com/${PKG_FORK}/raft.git
          GIT_TAG        ${PKG_PINNED_TAG}
          SOURCE_SUBDIR  cpp
          OPTIONS
          "BUILD_TESTS OFF"
          "BUILD_BENCH OFF"
          "RAFT_COMPILE_LIBRARIES ${PKG_COMPILE_LIBRARIES}"
  )

endfunction()

# Change pinned tag here to test a commit in CI
# To use a different RAFT locally, set the CMake variable
# CPM_raft_SOURCE=/path/to/local/raft
find_and_configure_raft(VERSION    ${RAFT_VERSION}.00
        FORK             ${RAFT_FORK}
        PINNED_TAG       ${RAFT_PINNED_TAG}
        COMPILE_LIBRARIES      NO
)

Several CMake targets can be made available by adding components in the table below to the RAFT_COMPONENTS list above, separated by spaces. The raft::raft target will always be available. RAFT headers require, at a minimum, the CUDA toolkit libraries and RMM dependencies.

Component	Target	Description	Base Dependencies
n/a	raft::raft	Full RAFT header library	CUDA toolkit library, RMM, Thrust (optional), NVTools (optional)
distance	raft::distance	Pre-compiled template specializations for raft::distance	raft::raft, cuCollections (optional)
nn	raft::nn	Pre-compiled template specializations for raft::neighbors	raft::raft, FAISS (optional)
distributed	raft::distributed	No specializations	raft::raft, UCX, NCCL

Source

The easiest way to build RAFT from source is to use the build.sh script at the root of the repository:

1. Create an environment with the needed dependencies:

mamba env create --name raft_dev_env -f conda/environments/all_cuda-118_arch-x86_64.yaml
mamba activate raft_dev_env

./build.sh raft-dask pylibraft libraft tests bench --compile-libs

The build instructions contain more details on building RAFT from source and including it in downstream projects. You can also find a more comprehensive version of the above CPM code snippet the Building RAFT C++ from source section of the build instructions.

Folder Structure and Contents

The folder structure mirrors other RAPIDS repos, with the following folders:

• ci: Scripts for running CI in PRs
• conda: Conda recipes and development conda environments
• cpp: Source code for C++ libraries.
  • bench: Benchmarks source code
  • cmake: Cmake modules and templates
  • doxygen: Doxygen configuration
  • include: The C++ API headers are fully-contained here (deprecated directories are excluded from the listing below)
    • cluster: Basic clustering primitives and algorithms.
    • comms: A multi-node multi-GPU communications abstraction layer for NCCL+UCX and MPI+NCCL, which can be deployed in Dask clusters using the raft-dask Python package.
    • core: Core API headers which require minimal dependencies aside from RMM and Cudatoolkit. These are safe to expose on public APIs and do not require nvcc to build. This is the same for any headers in RAFT which have the suffix *_types.hpp.
    • distance: Distance primitives
    • linalg: Dense linear algebra
    • matrix: Dense matrix operations
    • neighbors: Nearest neighbors and knn graph construction
    • random: Random number generation, sampling, and data generation primitives
    • solver: Iterative and combinatorial solvers for optimization and approximation
    • sparse: Sparse matrix operations
      • convert: Sparse conversion functions
      • distance: Sparse distance computations
      • linalg: Sparse linear algebra
      • neighbors: Sparse nearest neighbors and knn graph construction
      • op: Various sparse operations such as slicing and filtering (Note: this will soon be renamed to sparse/matrix)
      • solver: Sparse solvers for optimization and approximation
    • stats: Moments, summary statistics, model performance measures
    • util: Various reusable tools and utilities for accelerated algorithm development
  • internal: A private header-only component that hosts the code shared between benchmarks and tests.
  • scripts: Helpful scripts for development
  • src: Compiled APIs and template specializations for the shared libraries
  • test: Googletests source code
• docs: Source code and scripts for building library documentation (Uses breath, doxygen, & pydocs)
• python: Source code for Python libraries.
  • pylibraft: Python build and source code for pylibraft library
  • raft-dask: Python build and source code for raft-dask library
• thirdparty: Third-party licenses

Contributing

If you are interested in contributing to the RAFT project, please read our Contributing guidelines. Refer to the Developer Guide for details on the developer guidelines, workflows, and principals.

References

When citing RAFT generally, please consider referencing this Github project.

@misc{rapidsai, 
  title={Rapidsai/raft: RAFT contains fundamental widely-used algorithms and primitives for data science, Graph and machine learning.},
  url={https://github.com/rapidsai/raft}, 
  journal={GitHub}, 
  publisher={Nvidia RAPIDS}, 
  author={Rapidsai},
  year={2022}
}

If citing the sparse pairwise distances API, please consider using the following bibtex:

@article{nolet2021semiring,
  title={Semiring primitives for sparse neighborhood methods on the gpu},
  author={Nolet, Corey J and Gala, Divye and Raff, Edward and Eaton, Joe and Rees, Brad and Zedlewski, John and Oates, Tim},
  journal={arXiv preprint arXiv:2104.06357},
  year={2021}
}