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Commits on Aug 28, 2024

• Update USAGE.md

  mikolmogorov

  authored
  4e5cd79

• Update README.md

  mikolmogorov

  authored
  b7dc550

Commits on Aug 27, 2024

• 2.9.5

  mikolmogorov

  committed
  72b2afa

• error on python 2

  mikolmogorov

  committed
  adc119d

• Merge pull request #670 from pushkarnk/fix-669

  Show description for 81656fc
  mikolmogorov

  authored
  81656fc

Commits on May 24, 2024

• compliation fix for macos clang

  mikolmogorov

  committed
  b0efd48

Commits on May 14, 2024

• Update README.md

  mikolmogorov

  authored
  bcf94fa

• 2.9.4

  mikolmogorov

  committed
  6533492

• Merge branch 'flye' into flye-devel

  mikolmogorov

  committed
  341106f

Commits on Mar 15, 2024

• don't produce output if output_progress=False

  mikolmogorov

  committed
  6288291

Commits on Mar 9, 2024

• Merge pull request #646 from acollens/patch-1

  Show description for 21a7191
  mikolmogorov

  authored
  21a7191

Commits on Mar 6, 2024

• create coverage file if input is empty

  mikolmogorov

  committed
  5656d7c

Commits on Feb 28, 2024

• Merge pull request #663 from atabeerk/flye

  Show description for c493d85
  mikolmogorov

  authored
  c493d85

Commits on Feb 19, 2024

• Update README.md (#673)

  Show description for 8363b5e
  hyphaltip

  authored
  8363b5e

Commits on Feb 13, 2024

• disable loading hopoMatrix when hopoEnabled is not set

  atabeerk

  committed
  5ba20a5

Commits on Feb 3, 2024

• Move _SixMetaPathImporter to using find_spec()

  Show description for 441b1c6
  pushkarnk

  committed
  441b1c6

Commits on Jan 24, 2024

• restore limits (1, 128) for --threads parameters

  atabeerk

  committed
  16cc654

• now polisher is serial if num_proc is 1 instead of 0

  atabeerk

  committed
  96f14da

Commits on Jan 22, 2024

• polisher is serialized if --num_threads is 0

  atabeerk

  committed
  ab3df6a

Commits on Nov 28, 2023

• typo

  mikolmogorov

  committed
  4fc23c4

• 2.9.3

  mikolmogorov

  committed
  ec8ab67

Commits on Oct 31, 2023

• fix a spelling error in USAGE.md

  acollens

  authored
  973f033

Commits on Sep 8, 2023

• polishing coverage bugfix #620

  mikolmogorov

  committed
  7198b7d

• bam polishing only supports single iteration

  mikolmogorov

  committed
  911957b

Commits on Aug 18, 2023

• fix build failure with gcc 13 (#621)

  Show description for 40b9ea0
  emollier

  authored
  40b9ea0

Commits on May 30, 2023

• Merge branch 'flye-devel' into flye

  mikolmogorov

  committed
  bd3cace

• disable aggressive duplication filter (inner filter) in haplotype mode

  mikolmogorov

  committed
  4ff5382

Commits on May 16, 2023

• minimizer window 10 for nano hq

  mikolmogorov

  committed
  7d68290

Commits on May 14, 2023

• always output gfa before rr

  mikolmogorov

  committed
  bf4b26f

Commits on May 13, 2023

• max gap size 500

  mikolmogorov

  committed
  ee6ad13

Commits on May 1, 2023

• Update FAQ.md

  mikolmogorov

  authored
  e156df4

Commits on Apr 22, 2023

• Update README.md

  mikolmogorov

  authored
  c5864ad

Commits on Apr 11, 2023

• merge main

  mikolmogorov

  committed
  17d366c

• don't collapsed tandem repeats during graph construction with keep-haplotypes

  mikolmogorov

  committed
  b14a0b3

• don't run fork / fragile paths simpification in haplotype mode

  mikolmogorov

  committed
  5aab194

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