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Commits on Feb 7, 2024

• update version number

  TomKellyGenetics

  committed
  7cbd039

Commits on Feb 6, 2024

• update documentation for 1.2.7

  TomKellyGenetics

  committed
  0666845

• update documentation

  TomKellyGenetics

  committed
  65e04ff

• remove links for PIP-Seq and removes phase blocks for PIP-Seq v0, v1, and v4

  TomKellyGenetics

  committed
  d3fb59d

• upadte documentation

  TomKellyGenetics

  committed
  21c7005

• set up bacode whitelists for PIP-Seq versions 0-4

  TomKellyGenetics

  committed
  7f05119

• cnofigure inputs for PIP-Seq v0 (Delley et al., 2021)

  TomKellyGenetics

  committed
  b694c2b

• add PIP-Seq v0 (Delley et al., 2021) to documentation

  TomKellyGenetics

  committed
  2d1dec7

• adds custom barcode handler for VASA-drop

  TomKellyGenetics

  committed
  f2b4f93

• update VASA-drop parameters to suggest custom barcodes (all permutations supported as a fallback routine)

  TomKellyGenetics

  committed
  c69ed0b

• add separate barcodes for VASA-Seq (384 well plate version)

  TomKellyGenetics

  committed
  5c098a3

• add barcode whitelists for CEL-Seq, CEL-Seq2, and VASA-Seq (plate)

  TomKellyGenetics

  committed
  bcbe674

Commits on Sep 19, 2023

• configure inputs for PIP-Seq and VASA-Seq

  TomKellyGenetics

  committed
  c7c64f6

• configure inputs for PIP-Seq and VASA-Seq

  TomKellyGenetics

  committed
  94677d1

• add PIP-Seq and VASA-Seq to documentation (work-in-progress)

  TomKellyGenetics

  committed
  acbf266

• adds custom parameters (STRT-Seq-2018 technology) for Fan et al., (2018) https://doi.org/10.1038/s41422-018-0053-3 #12

  TomKellyGenetics

  committed
  848e490

• allow STRT-seq to run SC5P-R1 chemistry without R2 input files #16

  TomKellyGenetics

  committed
  7108b6e

Commits on May 25, 2023

• update documentation for 1.2.6

  TomKellyGenetics

  committed
  99a2065

• support BD Rhapsody v2 2022 enhanced beads

  Show description for ade8f8f
  TomKellyGenetics

  committed
  ade8f8f

• add BD Rhapody v2 to documentation

  TomKellyGenetics

  committed
  6106af3

• update SLIPT-Seq v1 to use 8bp UMI and remove adapters

  TomKellyGenetics

  committed
  486fc39

• bump version in docs

  TomKellyGenetics

  committed
  37b3e41

Commits on Mar 9, 2023

• update UMI parameters for SPLiT-Seq v1 and v2.1

  TomKellyGenetics

  committed
  9ba7bba

• update SPLiT-Seq in documentation

  TomKellyGenetics

  committed
  470e790

• update adapter trimming in SPLiT-Seq to match barcode whitelist

  TomKellyGenetics

  committed
  dd9e6af

• allow reverse complement in split-seq

  TomKellyGenetics

  committed
  acd8921

• correct automated generation of combinatorial barcode whitelists

  TomKellyGenetics

  committed
  ee84d52

Commits on Mar 3, 2023

• update documentation for 1.2.5.2-dev

  TomKellyGenetics

  committed
  4edff5b

• document pass command-line arguments to cellranger

  TomKellyGenetics

  committed
  ad6b681

• pass command-line arguments to cellranger

  TomKellyGenetics

  committed
  edd22e9

Commits on Feb 28, 2023

• update documentation

  TomKellyGenetics

  committed
  bc1e661

• add subroutine specific for SLiPT-Seq v2 adapters

  TomKellyGenetics

  committed
  d264dda

• document separate parameters for SPLiT-Seq v2.1

  TomKellyGenetics

  committed
  31ca08f

• update regex for split-seq v1 adapters #10

  TomKellyGenetics

  committed
  dd2318e

• bump dev version

  TomKellyGenetics

  committed
  dd901bd

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