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Commits on Jan 13, 2022

• Fixed a typo in the differentiation notebook binder link, fixed some math notation in the trapping and constrained optimizers, removed matplotlib from requirements-dev since it is included in requi…

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  Alan Kaptanoglu

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  Alan Kaptanoglu

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Commits on Jan 12, 2022

• Updated the binder links... hoping this works now.

  

  Alan Kaptanoglu

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• Merge branch 'master' of https://github.com/dynamicslab/pysindy

  

  Alan Kaptanoglu

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• Did all the things from the first JOSS review. Fixed the math notation in the optimizer descriptions. Added a verbose option for all the optimizers, tested it, added unit tests, and added simple ex…

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  Alan Kaptanoglu

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• Updated ReadMe so that flowchart image is linked to

  akaptano

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• Merge branch 'master' of https://github.com/dynamicslab/pysindy

  

  Alan Kaptanoglu

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• Added matplotlib to requirements so that binder notebooks run properly.

  

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Commits on Jan 11, 2022

• Updated .pre-commit-config.yaml file to make it compatible with new GitHub security protocols

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• Fixed errors with PDE and weak libraries with multiple trajectories and ensembling on. Added some tests to test_pysindy.py

  

  Alan Kaptanoglu

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  Alan Kaptanoglu

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Commits on Jan 10, 2022

• fixed PDELibrary reshaping for odes

  znicolaou

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• fixed multiple_trajectories=True for PDELibrary and WeakPDELibrary for ensemble=False

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Commits on Jan 8, 2022

• Created a contributor covenant file in the docs/ directory

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Commits on Jan 6, 2022

• Fixed all the binder links to v1.6 and fixed a tiny bit of notation in the PDE and WeakPDE libraries.

  

  Alan Kaptanoglu

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• Merge pull request dynamicslab#144 from dynamicslab/pde_optimization

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• Merge branch 'pde_optimization' of https://github.com/dynamicslab/pysindy into pde_optimization

  

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• Okay think I have finalized everything on the pde_optimization branch before the merge. Added some tests, debugged an issue with PDE/WeakPDEs with the generalizedlibrary and ensembling functionalit…

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  Alan Kaptanoglu

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• Added Zach as an author in the new JOSS paper.md file

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• Added Zach to new PySINDy JOSS paper author list

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Commits on Jan 5, 2022

• updated WeakPDELibrary ensembling

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Commits on Dec 31, 2021

• In the process of trying to reshape things properly for multidimensional > 2 arrays, I basically broke everything. Seemed to have fixed things now, although the PDE results look slightly different …

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  Alan Kaptanoglu

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Commits on Dec 30, 2021

• Updated most of the code to Zachs suggestion that the reshaping of x_dot and the weak form is done behind-the-scenes. Made some small edits here and there and added a few tests of some of the less …

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Commits on Dec 27, 2021

• added odd accuracy orders

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• Added an illustration in Example 5 showing that Zachs spectral derivative is much faster than the derivative package. Cleaned up some code here and there. Added some tests of the spectral derivativ…

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Commits on Dec 26, 2021

• merged notebook updates

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• new finite differences for arbitrary orders and variable timesteps

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Commits on Dec 25, 2021

• Cleaned up the notebooks a tiny bit.

  

  Alan Kaptanoglu

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Commits on Dec 24, 2021

• debugged the weak mixed derivative terms

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Commits on Dec 23, 2021

• added mixed_integral sign correction and casted to tuples for future warnings

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• fixed a coupled small errors

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Commits on Dec 22, 2021

• Updated the example notebooks. Everything seems to be working as far as I can tell... but not totally sure about if the weak formulation implementation is fully correct + could be faster.

  

  Alan Kaptanoglu

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• Added a few more unit tests of the axis differentiation. Cleaned up the weak form code a bit.

  

  Alan Kaptanoglu

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• fixed variable timestep d=3 finite difference scale factor

  znicolaou

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• added scs<=2.1.4 requirement

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• Weak form speedup almost working... quite a bit faster than before but more speedup is available and the mixed terms are still not quite right. Also have a small bug in the finite differencing for …

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  Alan Kaptanoglu

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Commits on Dec 21, 2021

• Getting close to finished with the weak form changes. Mixed derivative terms still not quite correct, and the code needs to be improved for speed.

  

  Alan Kaptanoglu

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