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Commits on Oct 15, 2021

• Updating planned improvements section (broadinstitute#471)

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  kbergin

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  ekiernan

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Commits on Oct 14, 2021

• updatinga all broad-references to the public reference bucket (broadinstitute#466)

  cheyenne-gold

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• Bump prismjs from 1.24.0 to 1.25.0 in /website (broadinstitute#440)

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• Bump path-parse from 1.0.6 to 1.0.7 in /website (broadinstitute#393)

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• Bump url-parse from 1.5.1 to 1.5.3 in /website (broadinstitute#412)

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• Wd gl 1697 imputation docker (broadinstitute#460)

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  wjdingman1

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  cheyenne-gold

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• Merge pull request broadinstitute#459 from broadinstitute/gg_GL-1736_Updates

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  gbggrant

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• UploadFingerprintToMercury need not be a volatile task.

  gbggrant

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• update paths in by_chromosome_client.sh (broadinstitute#465)

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  snovod

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  cheyenne-gold

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• Updated Imputation Overview (broadinstitute#463)

  ekiernan

  authored
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Commits on Oct 12, 2021

• Np standardize runtime imputation tasks (broadinstitute#461)

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  nikellepetrillo

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Commits on Oct 9, 2021

• [GL-1694] Adding scientific tests for Imputation Pipeline (broadinstitute#455)

  cheyenne-gold

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Commits on Oct 8, 2021

• grab document id instead of file_uuid (broadinstitute#458)

  nikellepetrillo

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Commits on Oct 7, 2021

• GL-1750. Change outputs of Arrays and ValidateChip pipelines to use python naming convention (broadinstitute#457)

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  gbggrant

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Commits on Oct 6, 2021

• [GL-476] Docker Image Best Practices - Previously [GL-1379] Add AppSec trivy scans on PR (broadinstitute#214)

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  5 peopleauthored
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• [GL-1710] Add Imputation pipeline plumbing test (broadinstitute#446)

  cheyenne-gold

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• Fixed custom container titles in doc_style.md (broadinstitute#437)

  kew24

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Commits on Oct 4, 2021

• Merge pull request broadinstitute#454 from broadinstitute/gg_MinorCleanup

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  gbggrant

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Commits on Oct 1, 2021

• Some Cleanups.

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  gbggrant

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• Find imputation reference panel files based on file path and contig (broadinstitute#453)

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  jessicaway

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Commits on Sep 29, 2021

• Merge pull request broadinstitute#451 from broadinstitute/gg_GL-1730_LookupTableForExtendedIlluminaManifest

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  gbggrant

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• Merge remote-tracking branch 'origin/develop' into gg_GL-1730_LookupTableForExtendedIlluminaManifest

  gbggrant

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• GL-1730. Have Arrays Pipeline look up Extended Illumina Manifest from lookup table.

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  gbggrant

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• fixing spacing issue to make yaml valid (broadinstitute#452)

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  cheyenne-gold

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• GL-1699 add imputation pipeline to pullapprove (broadinstitute#450)

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  jessicaway

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Commits on Sep 28, 2021

• Merge pull request broadinstitute#447 from broadinstitute/gg_GL-1724_LookupControlSampleInformationByName

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  gbggrant

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• GL-1724. Look up the control genotype file and friends using the control sample name.

  gbggrant

  committed
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• Merge pull request broadinstitute#449 from broadinstitute/gg_GL-1736_DoNotWriteFingerprintsToMercuryForControlSamples

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  gbggrant

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• GL-1736. Don't write fingeprints to the Mercury Fingerprint Store if the sample is a control

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  gbggrant

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Commits on Sep 25, 2021

• Merge pull request broadinstitute#444 from broadinstitute/gg_GL-1726_LookupClusterFileByName

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  gbggrant

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Commits on Sep 24, 2021

• GL-1726. Enabled pipeline to lookup cluster file using cluster_filename and arrays_metadata_path

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  gbggrant

  committed
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• Imputation pipeline (broadinstitute#363)

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  kachulis

  authored
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• Merge pull request broadinstitute#443 from broadinstitute/gg_AddMoreTestsForGdaArray

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  gbggrant

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Commits on Sep 23, 2021

• Three new GDA samples.

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  gbggrant

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• Merge pull request broadinstitute#441 from broadinstitute/gg_GL-1725_LookupBeadPoolManifestFileByName

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  gbggrant

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