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test_subgraph.py
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import unittest
import backend as F
import networkx as nx
import numpy as np
import pytest
import scipy.sparse as ssp
from test_utils import parametrize_idtype
import dgl
D = 5
def generate_graph(grad=False, add_data=True):
g = dgl.DGLGraph().to(F.ctx())
g.add_nodes(10)
# create a graph where 0 is the source and 9 is the sink
for i in range(1, 9):
g.add_edge(0, i)
g.add_edge(i, 9)
# add a back flow from 9 to 0
g.add_edge(9, 0)
if add_data:
ncol = F.randn((10, D))
ecol = F.randn((17, D))
if grad:
ncol = F.attach_grad(ncol)
ecol = F.attach_grad(ecol)
g.ndata["h"] = ncol
g.edata["l"] = ecol
return g
def test_edge_subgraph():
# Test when the graph has no node data and edge data.
g = generate_graph(add_data=False)
eid = [0, 2, 3, 6, 7, 9]
# relabel=True
sg = g.edge_subgraph(eid)
assert F.array_equal(
sg.ndata[dgl.NID], F.tensor([0, 2, 4, 5, 1, 9], g.idtype)
)
assert F.array_equal(sg.edata[dgl.EID], F.tensor(eid, g.idtype))
sg.ndata["h"] = F.arange(0, sg.number_of_nodes())
sg.edata["h"] = F.arange(0, sg.number_of_edges())
# relabel=False
sg = g.edge_subgraph(eid, relabel_nodes=False)
assert g.number_of_nodes() == sg.number_of_nodes()
assert F.array_equal(sg.edata[dgl.EID], F.tensor(eid, g.idtype))
sg.ndata["h"] = F.arange(0, sg.number_of_nodes())
sg.edata["h"] = F.arange(0, sg.number_of_edges())
def test_subgraph():
g = generate_graph()
h = g.ndata["h"]
l = g.edata["l"]
nid = [0, 2, 3, 6, 7, 9]
sg = g.subgraph(nid)
eid = {2, 3, 4, 5, 10, 11, 12, 13, 16}
assert set(F.asnumpy(sg.edata[dgl.EID])) == eid
eid = sg.edata[dgl.EID]
# the subgraph is empty initially except for NID/EID field
assert len(sg.ndata) == 2
assert len(sg.edata) == 2
sh = sg.ndata["h"]
assert F.allclose(F.gather_row(h, F.tensor(nid)), sh)
"""
s, d, eid
0, 1, 0
1, 9, 1
0, 2, 2 1
2, 9, 3 1
0, 3, 4 1
3, 9, 5 1
0, 4, 6
4, 9, 7
0, 5, 8
5, 9, 9 3
0, 6, 10 1
6, 9, 11 1 3
0, 7, 12 1
7, 9, 13 1 3
0, 8, 14
8, 9, 15 3
9, 0, 16 1
"""
assert F.allclose(F.gather_row(l, eid), sg.edata["l"])
# update the node/edge features on the subgraph should NOT
# reflect to the parent graph.
sg.ndata["h"] = F.zeros((6, D))
assert F.allclose(h, g.ndata["h"])
def _test_map_to_subgraph():
g = dgl.DGLGraph()
g.add_nodes(10)
g.add_edges(F.arange(0, 9), F.arange(1, 10))
h = g.subgraph([0, 1, 2, 5, 8])
v = h.map_to_subgraph_nid([0, 8, 2])
assert np.array_equal(F.asnumpy(v), np.array([0, 4, 2]))
def create_test_heterograph(idtype):
# test heterograph from the docstring, plus a user -- wishes -- game relation
# 3 users, 2 games, 2 developers
# metagraph:
# ('user', 'follows', 'user'),
# ('user', 'plays', 'game'),
# ('user', 'wishes', 'game'),
# ('developer', 'develops', 'game')])
g = dgl.heterograph(
{
("user", "follows", "user"): ([0, 1], [1, 2]),
("user", "plays", "game"): ([0, 1, 2, 1], [0, 0, 1, 1]),
("user", "wishes", "game"): ([0, 2], [1, 0]),
("developer", "develops", "game"): ([0, 1], [0, 1]),
},
idtype=idtype,
device=F.ctx(),
)
for etype in g.etypes:
g.edges[etype].data["weight"] = F.randn((g.num_edges(etype),))
assert g.idtype == idtype
assert g.device == F.ctx()
return g
@unittest.skipIf(
dgl.backend.backend_name == "mxnet",
reason="MXNet doesn't support bool tensor",
)
@parametrize_idtype
def test_subgraph_mask(idtype):
g = create_test_heterograph(idtype)
g_graph = g["follows"]
g_bipartite = g["plays"]
x = F.randn((3, 5))
y = F.randn((2, 4))
g.nodes["user"].data["h"] = x
g.edges["follows"].data["h"] = y
def _check_subgraph(g, sg):
assert sg.idtype == g.idtype
assert sg.device == g.device
assert sg.ntypes == g.ntypes
assert sg.etypes == g.etypes
assert sg.canonical_etypes == g.canonical_etypes
assert F.array_equal(
F.tensor(sg.nodes["user"].data[dgl.NID]), F.tensor([1, 2], idtype)
)
assert F.array_equal(
F.tensor(sg.nodes["game"].data[dgl.NID]), F.tensor([0], idtype)
)
assert F.array_equal(
F.tensor(sg.edges["follows"].data[dgl.EID]), F.tensor([1], idtype)
)
assert F.array_equal(
F.tensor(sg.edges["plays"].data[dgl.EID]), F.tensor([1], idtype)
)
assert F.array_equal(
F.tensor(sg.edges["wishes"].data[dgl.EID]), F.tensor([1], idtype)
)
assert sg.number_of_nodes("developer") == 0
assert sg.number_of_edges("develops") == 0
assert F.array_equal(
sg.nodes["user"].data["h"], g.nodes["user"].data["h"][1:3]
)
assert F.array_equal(
sg.edges["follows"].data["h"], g.edges["follows"].data["h"][1:2]
)
sg1 = g.subgraph(
{
"user": F.tensor([False, True, True], dtype=F.bool),
"game": F.tensor([True, False, False, False], dtype=F.bool),
}
)
_check_subgraph(g, sg1)
sg2 = g.edge_subgraph(
{
"follows": F.tensor([False, True], dtype=F.bool),
"plays": F.tensor([False, True, False, False], dtype=F.bool),
"wishes": F.tensor([False, True], dtype=F.bool),
}
)
_check_subgraph(g, sg2)
@parametrize_idtype
def test_subgraph1(idtype):
g = create_test_heterograph(idtype)
g_graph = g["follows"]
g_bipartite = g["plays"]
x = F.randn((3, 5))
y = F.randn((2, 4))
g.nodes["user"].data["h"] = x
g.edges["follows"].data["h"] = y
def _check_subgraph(g, sg):
assert sg.idtype == g.idtype
assert sg.device == g.device
assert sg.ntypes == g.ntypes
assert sg.etypes == g.etypes
assert sg.canonical_etypes == g.canonical_etypes
assert F.array_equal(
F.tensor(sg.nodes["user"].data[dgl.NID]), F.tensor([1, 2], g.idtype)
)
assert F.array_equal(
F.tensor(sg.nodes["game"].data[dgl.NID]), F.tensor([0], g.idtype)
)
assert F.array_equal(
F.tensor(sg.edges["follows"].data[dgl.EID]), F.tensor([1], g.idtype)
)
assert F.array_equal(
F.tensor(sg.edges["plays"].data[dgl.EID]), F.tensor([1], g.idtype)
)
assert F.array_equal(
F.tensor(sg.edges["wishes"].data[dgl.EID]), F.tensor([1], g.idtype)
)
assert sg.number_of_nodes("developer") == 0
assert sg.number_of_edges("develops") == 0
assert F.array_equal(
sg.nodes["user"].data["h"], g.nodes["user"].data["h"][1:3]
)
assert F.array_equal(
sg.edges["follows"].data["h"], g.edges["follows"].data["h"][1:2]
)
sg1 = g.subgraph({"user": [1, 2], "game": [0]})
_check_subgraph(g, sg1)
sg2 = g.edge_subgraph({"follows": [1], "plays": [1], "wishes": [1]})
_check_subgraph(g, sg2)
# backend tensor input
sg1 = g.subgraph(
{
"user": F.tensor([1, 2], dtype=idtype),
"game": F.tensor([0], dtype=idtype),
}
)
_check_subgraph(g, sg1)
sg2 = g.edge_subgraph(
{
"follows": F.tensor([1], dtype=idtype),
"plays": F.tensor([1], dtype=idtype),
"wishes": F.tensor([1], dtype=idtype),
}
)
_check_subgraph(g, sg2)
# numpy input
sg1 = g.subgraph({"user": np.array([1, 2]), "game": np.array([0])})
_check_subgraph(g, sg1)
sg2 = g.edge_subgraph(
{
"follows": np.array([1]),
"plays": np.array([1]),
"wishes": np.array([1]),
}
)
_check_subgraph(g, sg2)
def _check_subgraph_single_ntype(g, sg, preserve_nodes=False):
assert sg.idtype == g.idtype
assert sg.device == g.device
assert sg.ntypes == g.ntypes
assert sg.etypes == g.etypes
assert sg.canonical_etypes == g.canonical_etypes
if not preserve_nodes:
assert F.array_equal(
F.tensor(sg.nodes["user"].data[dgl.NID]),
F.tensor([1, 2], g.idtype),
)
else:
for ntype in sg.ntypes:
assert g.number_of_nodes(ntype) == sg.number_of_nodes(ntype)
assert F.array_equal(
F.tensor(sg.edges["follows"].data[dgl.EID]), F.tensor([1], g.idtype)
)
if not preserve_nodes:
assert F.array_equal(
sg.nodes["user"].data["h"], g.nodes["user"].data["h"][1:3]
)
assert F.array_equal(
sg.edges["follows"].data["h"], g.edges["follows"].data["h"][1:2]
)
def _check_subgraph_single_etype(g, sg, preserve_nodes=False):
assert sg.ntypes == g.ntypes
assert sg.etypes == g.etypes
assert sg.canonical_etypes == g.canonical_etypes
if not preserve_nodes:
assert F.array_equal(
F.tensor(sg.nodes["user"].data[dgl.NID]),
F.tensor([0, 1], g.idtype),
)
assert F.array_equal(
F.tensor(sg.nodes["game"].data[dgl.NID]),
F.tensor([0], g.idtype),
)
else:
for ntype in sg.ntypes:
assert g.number_of_nodes(ntype) == sg.number_of_nodes(ntype)
assert F.array_equal(
F.tensor(sg.edges["plays"].data[dgl.EID]),
F.tensor([0, 1], g.idtype),
)
sg1_graph = g_graph.subgraph([1, 2])
_check_subgraph_single_ntype(g_graph, sg1_graph)
sg1_graph = g_graph.edge_subgraph([1])
_check_subgraph_single_ntype(g_graph, sg1_graph)
sg1_graph = g_graph.edge_subgraph([1], relabel_nodes=False)
_check_subgraph_single_ntype(g_graph, sg1_graph, True)
sg2_bipartite = g_bipartite.edge_subgraph([0, 1])
_check_subgraph_single_etype(g_bipartite, sg2_bipartite)
sg2_bipartite = g_bipartite.edge_subgraph([0, 1], relabel_nodes=False)
_check_subgraph_single_etype(g_bipartite, sg2_bipartite, True)
def _check_typed_subgraph1(g, sg):
assert g.idtype == sg.idtype
assert g.device == sg.device
assert set(sg.ntypes) == {"user", "game"}
assert set(sg.etypes) == {"follows", "plays", "wishes"}
for ntype in sg.ntypes:
assert sg.number_of_nodes(ntype) == g.number_of_nodes(ntype)
for etype in sg.etypes:
src_sg, dst_sg = sg.all_edges(etype=etype, order="eid")
src_g, dst_g = g.all_edges(etype=etype, order="eid")
assert F.array_equal(src_sg, src_g)
assert F.array_equal(dst_sg, dst_g)
assert F.array_equal(
sg.nodes["user"].data["h"], g.nodes["user"].data["h"]
)
assert F.array_equal(
sg.edges["follows"].data["h"], g.edges["follows"].data["h"]
)
g.nodes["user"].data["h"] = F.scatter_row(
g.nodes["user"].data["h"], F.tensor([2]), F.randn((1, 5))
)
g.edges["follows"].data["h"] = F.scatter_row(
g.edges["follows"].data["h"], F.tensor([1]), F.randn((1, 4))
)
assert F.array_equal(
sg.nodes["user"].data["h"], g.nodes["user"].data["h"]
)
assert F.array_equal(
sg.edges["follows"].data["h"], g.edges["follows"].data["h"]
)
def _check_typed_subgraph2(g, sg):
assert set(sg.ntypes) == {"developer", "game"}
assert set(sg.etypes) == {"develops"}
for ntype in sg.ntypes:
assert sg.number_of_nodes(ntype) == g.number_of_nodes(ntype)
for etype in sg.etypes:
src_sg, dst_sg = sg.all_edges(etype=etype, order="eid")
src_g, dst_g = g.all_edges(etype=etype, order="eid")
assert F.array_equal(src_sg, src_g)
assert F.array_equal(dst_sg, dst_g)
sg3 = g.node_type_subgraph(["user", "game"])
_check_typed_subgraph1(g, sg3)
sg4 = g.edge_type_subgraph(["develops"])
_check_typed_subgraph2(g, sg4)
sg5 = g.edge_type_subgraph(["follows", "plays", "wishes"])
_check_typed_subgraph1(g, sg5)
# Test for restricted format
for fmt in ["csr", "csc", "coo"]:
g = dgl.graph(([0, 1], [1, 2])).formats(fmt)
sg = g.subgraph({g.ntypes[0]: [1, 0]})
nids = F.asnumpy(sg.ndata[dgl.NID])
assert np.array_equal(nids, np.array([1, 0]))
src, dst = sg.edges(order="eid")
src = F.asnumpy(src)
dst = F.asnumpy(dst)
assert np.array_equal(src, np.array([1]))
@parametrize_idtype
def test_in_subgraph(idtype):
hg = dgl.heterograph(
{
("user", "follow", "user"): (
[1, 2, 3, 0, 2, 3, 0],
[0, 0, 0, 1, 1, 1, 2],
),
("user", "play", "game"): ([0, 0, 1, 3], [0, 1, 2, 2]),
("game", "liked-by", "user"): (
[2, 2, 2, 1, 1, 0],
[0, 1, 2, 0, 3, 0],
),
("user", "flips", "coin"): ([0, 1, 2, 3], [0, 0, 0, 0]),
},
idtype=idtype,
num_nodes_dict={"user": 5, "game": 10, "coin": 8},
).to(F.ctx())
subg = dgl.in_subgraph(hg, {"user": [0, 1], "game": 0})
assert subg.idtype == idtype
assert len(subg.ntypes) == 3
assert len(subg.etypes) == 4
u, v = subg["follow"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert F.array_equal(
hg["follow"].edge_ids(u, v), subg["follow"].edata[dgl.EID]
)
assert edge_set == {(1, 0), (2, 0), (3, 0), (0, 1), (2, 1), (3, 1)}
u, v = subg["play"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert F.array_equal(hg["play"].edge_ids(u, v), subg["play"].edata[dgl.EID])
assert edge_set == {(0, 0)}
u, v = subg["liked-by"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert F.array_equal(
hg["liked-by"].edge_ids(u, v), subg["liked-by"].edata[dgl.EID]
)
assert edge_set == {(2, 0), (2, 1), (1, 0), (0, 0)}
assert subg["flips"].number_of_edges() == 0
for ntype in subg.ntypes:
assert dgl.NID not in subg.nodes[ntype].data
# Test store_ids
subg = dgl.in_subgraph(hg, {"user": [0, 1], "game": 0}, store_ids=False)
for etype in ["follow", "play", "liked-by"]:
assert dgl.EID not in subg.edges[etype].data
for ntype in subg.ntypes:
assert dgl.NID not in subg.nodes[ntype].data
# Test relabel nodes
subg = dgl.in_subgraph(hg, {"user": [0, 1], "game": 0}, relabel_nodes=True)
assert subg.idtype == idtype
assert len(subg.ntypes) == 3
assert len(subg.etypes) == 4
u, v = subg["follow"].edges()
old_u = F.gather_row(subg.nodes["user"].data[dgl.NID], u)
old_v = F.gather_row(subg.nodes["user"].data[dgl.NID], v)
assert F.array_equal(
hg["follow"].edge_ids(old_u, old_v), subg["follow"].edata[dgl.EID]
)
edge_set = set(zip(list(F.asnumpy(old_u)), list(F.asnumpy(old_v))))
assert edge_set == {(1, 0), (2, 0), (3, 0), (0, 1), (2, 1), (3, 1)}
u, v = subg["play"].edges()
old_u = F.gather_row(subg.nodes["user"].data[dgl.NID], u)
old_v = F.gather_row(subg.nodes["game"].data[dgl.NID], v)
assert F.array_equal(
hg["play"].edge_ids(old_u, old_v), subg["play"].edata[dgl.EID]
)
edge_set = set(zip(list(F.asnumpy(old_u)), list(F.asnumpy(old_v))))
assert edge_set == {(0, 0)}
u, v = subg["liked-by"].edges()
old_u = F.gather_row(subg.nodes["game"].data[dgl.NID], u)
old_v = F.gather_row(subg.nodes["user"].data[dgl.NID], v)
assert F.array_equal(
hg["liked-by"].edge_ids(old_u, old_v), subg["liked-by"].edata[dgl.EID]
)
edge_set = set(zip(list(F.asnumpy(old_u)), list(F.asnumpy(old_v))))
assert edge_set == {(2, 0), (2, 1), (1, 0), (0, 0)}
assert subg.num_nodes("user") == 4
assert subg.num_nodes("game") == 3
assert subg.num_nodes("coin") == 0
assert subg.num_edges("flips") == 0
@parametrize_idtype
def test_out_subgraph(idtype):
hg = dgl.heterograph(
{
("user", "follow", "user"): (
[1, 2, 3, 0, 2, 3, 0],
[0, 0, 0, 1, 1, 1, 2],
),
("user", "play", "game"): ([0, 0, 1, 3], [0, 1, 2, 2]),
("game", "liked-by", "user"): (
[2, 2, 2, 1, 1, 0],
[0, 1, 2, 0, 3, 0],
),
("user", "flips", "coin"): ([0, 1, 2, 3], [0, 0, 0, 0]),
},
idtype=idtype,
).to(F.ctx())
subg = dgl.out_subgraph(hg, {"user": [0, 1], "game": 0})
assert subg.idtype == idtype
assert len(subg.ntypes) == 3
assert len(subg.etypes) == 4
u, v = subg["follow"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(1, 0), (0, 1), (0, 2)}
assert F.array_equal(
hg["follow"].edge_ids(u, v), subg["follow"].edata[dgl.EID]
)
u, v = subg["play"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 0), (0, 1), (1, 2)}
assert F.array_equal(hg["play"].edge_ids(u, v), subg["play"].edata[dgl.EID])
u, v = subg["liked-by"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 0)}
assert F.array_equal(
hg["liked-by"].edge_ids(u, v), subg["liked-by"].edata[dgl.EID]
)
u, v = subg["flips"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 0), (1, 0)}
assert F.array_equal(
hg["flips"].edge_ids(u, v), subg["flips"].edata[dgl.EID]
)
for ntype in subg.ntypes:
assert dgl.NID not in subg.nodes[ntype].data
# Test store_ids
subg = dgl.out_subgraph(hg, {"user": [0, 1], "game": 0}, store_ids=False)
for etype in subg.canonical_etypes:
assert dgl.EID not in subg.edges[etype].data
for ntype in subg.ntypes:
assert dgl.NID not in subg.nodes[ntype].data
# Test relabel nodes
subg = dgl.out_subgraph(hg, {"user": [1], "game": 0}, relabel_nodes=True)
assert subg.idtype == idtype
assert len(subg.ntypes) == 3
assert len(subg.etypes) == 4
u, v = subg["follow"].edges()
old_u = F.gather_row(subg.nodes["user"].data[dgl.NID], u)
old_v = F.gather_row(subg.nodes["user"].data[dgl.NID], v)
edge_set = set(zip(list(F.asnumpy(old_u)), list(F.asnumpy(old_v))))
assert edge_set == {(1, 0)}
assert F.array_equal(
hg["follow"].edge_ids(old_u, old_v), subg["follow"].edata[dgl.EID]
)
u, v = subg["play"].edges()
old_u = F.gather_row(subg.nodes["user"].data[dgl.NID], u)
old_v = F.gather_row(subg.nodes["game"].data[dgl.NID], v)
edge_set = set(zip(list(F.asnumpy(old_u)), list(F.asnumpy(old_v))))
assert edge_set == {(1, 2)}
assert F.array_equal(
hg["play"].edge_ids(old_u, old_v), subg["play"].edata[dgl.EID]
)
u, v = subg["liked-by"].edges()
old_u = F.gather_row(subg.nodes["game"].data[dgl.NID], u)
old_v = F.gather_row(subg.nodes["user"].data[dgl.NID], v)
edge_set = set(zip(list(F.asnumpy(old_u)), list(F.asnumpy(old_v))))
assert edge_set == {(0, 0)}
assert F.array_equal(
hg["liked-by"].edge_ids(old_u, old_v), subg["liked-by"].edata[dgl.EID]
)
u, v = subg["flips"].edges()
old_u = F.gather_row(subg.nodes["user"].data[dgl.NID], u)
old_v = F.gather_row(subg.nodes["coin"].data[dgl.NID], v)
edge_set = set(zip(list(F.asnumpy(old_u)), list(F.asnumpy(old_v))))
assert edge_set == {(1, 0)}
assert F.array_equal(
hg["flips"].edge_ids(old_u, old_v), subg["flips"].edata[dgl.EID]
)
assert subg.num_nodes("user") == 2
assert subg.num_nodes("game") == 2
assert subg.num_nodes("coin") == 1
def test_subgraph_message_passing():
# Unit test for PR #2055
g = dgl.graph(([0, 1, 2], [2, 3, 4])).to(F.cpu())
g.ndata["x"] = F.copy_to(F.randn((5, 6)), F.cpu())
sg = g.subgraph([1, 2, 3]).to(F.ctx())
sg.update_all(
lambda edges: {"x": edges.src["x"]},
lambda nodes: {"y": F.sum(nodes.mailbox["x"], 1)},
)
@parametrize_idtype
def test_khop_in_subgraph(idtype):
g = dgl.graph(
([1, 1, 2, 3, 4], [0, 2, 0, 4, 2]), idtype=idtype, device=F.ctx()
)
g.edata["w"] = F.tensor([[0, 1], [2, 3], [4, 5], [6, 7], [8, 9]])
sg, inv = dgl.khop_in_subgraph(g, 0, k=2)
assert sg.idtype == g.idtype
u, v = sg.edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(1, 0), (1, 2), (2, 0), (3, 2)}
assert F.array_equal(
sg.edata[dgl.EID], F.tensor([0, 1, 2, 4], dtype=idtype)
)
assert F.array_equal(
sg.edata["w"], F.tensor([[0, 1], [2, 3], [4, 5], [8, 9]])
)
assert F.array_equal(F.astype(inv, idtype), F.tensor([0], idtype))
# Test multiple nodes
sg, inv = dgl.khop_in_subgraph(g, [0, 2], k=1)
assert sg.num_edges() == 4
sg, inv = dgl.khop_in_subgraph(g, F.tensor([0, 2], idtype), k=1)
assert sg.num_edges() == 4
# Test isolated node
sg, inv = dgl.khop_in_subgraph(g, 1, k=2)
assert sg.idtype == g.idtype
assert sg.num_nodes() == 1
assert sg.num_edges() == 0
assert F.array_equal(F.astype(inv, idtype), F.tensor([0], idtype))
g = dgl.heterograph(
{
("user", "plays", "game"): ([0, 1, 1, 2], [0, 0, 2, 1]),
("user", "follows", "user"): ([0, 1, 1], [1, 2, 2]),
},
idtype=idtype,
device=F.ctx(),
)
sg, inv = dgl.khop_in_subgraph(g, {"game": 0}, k=2)
assert sg.idtype == idtype
assert sg.num_nodes("game") == 1
assert sg.num_nodes("user") == 2
assert len(sg.ntypes) == 2
assert len(sg.etypes) == 2
u, v = sg["follows"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 1)}
u, v = sg["plays"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 0), (1, 0)}
assert F.array_equal(F.astype(inv["game"], idtype), F.tensor([0], idtype))
# Test isolated node
sg, inv = dgl.khop_in_subgraph(g, {"user": 0}, k=2)
assert sg.idtype == idtype
assert sg.num_nodes("game") == 0
assert sg.num_nodes("user") == 1
assert sg.num_edges("follows") == 0
assert sg.num_edges("plays") == 0
assert F.array_equal(F.astype(inv["user"], idtype), F.tensor([0], idtype))
# Test multiple nodes
sg, inv = dgl.khop_in_subgraph(
g, {"user": F.tensor([0, 1], idtype), "game": 0}, k=1
)
u, v = sg["follows"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 1)}
u, v = sg["plays"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 0), (1, 0)}
assert F.array_equal(
F.astype(inv["user"], idtype), F.tensor([0, 1], idtype)
)
assert F.array_equal(F.astype(inv["game"], idtype), F.tensor([0], idtype))
@parametrize_idtype
def test_khop_out_subgraph(idtype):
g = dgl.graph(
([0, 2, 0, 4, 2], [1, 1, 2, 3, 4]), idtype=idtype, device=F.ctx()
)
g.edata["w"] = F.tensor([[0, 1], [2, 3], [4, 5], [6, 7], [8, 9]])
sg, inv = dgl.khop_out_subgraph(g, 0, k=2)
assert sg.idtype == g.idtype
u, v = sg.edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 1), (2, 1), (0, 2), (2, 3)}
assert F.array_equal(
sg.edata[dgl.EID], F.tensor([0, 2, 1, 4], dtype=idtype)
)
assert F.array_equal(
sg.edata["w"], F.tensor([[0, 1], [4, 5], [2, 3], [8, 9]])
)
assert F.array_equal(F.astype(inv, idtype), F.tensor([0], idtype))
# Test multiple nodes
sg, inv = dgl.khop_out_subgraph(g, [0, 2], k=1)
assert sg.num_edges() == 4
sg, inv = dgl.khop_out_subgraph(g, F.tensor([0, 2], idtype), k=1)
assert sg.num_edges() == 4
# Test isolated node
sg, inv = dgl.khop_out_subgraph(g, 1, k=2)
assert sg.idtype == g.idtype
assert sg.num_nodes() == 1
assert sg.num_edges() == 0
assert F.array_equal(F.astype(inv, idtype), F.tensor([0], idtype))
g = dgl.heterograph(
{
("user", "plays", "game"): ([0, 1, 1, 2], [0, 0, 2, 1]),
("user", "follows", "user"): ([0, 1], [1, 3]),
},
idtype=idtype,
device=F.ctx(),
)
sg, inv = dgl.khop_out_subgraph(g, {"user": 0}, k=2)
assert sg.idtype == idtype
assert sg.num_nodes("game") == 2
assert sg.num_nodes("user") == 3
assert len(sg.ntypes) == 2
assert len(sg.etypes) == 2
u, v = sg["follows"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 1), (1, 2)}
u, v = sg["plays"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 0), (1, 0), (1, 1)}
assert F.array_equal(F.astype(inv["user"], idtype), F.tensor([0], idtype))
# Test isolated node
sg, inv = dgl.khop_out_subgraph(g, {"user": 3}, k=2)
assert sg.idtype == idtype
assert sg.num_nodes("game") == 0
assert sg.num_nodes("user") == 1
assert sg.num_edges("follows") == 0
assert sg.num_edges("plays") == 0
assert F.array_equal(F.astype(inv["user"], idtype), F.tensor([0], idtype))
# Test multiple nodes
sg, inv = dgl.khop_out_subgraph(
g, {"user": F.tensor([2], idtype), "game": 0}, k=1
)
assert sg.num_edges("follows") == 0
u, v = sg["plays"].edges()
edge_set = set(zip(list(F.asnumpy(u)), list(F.asnumpy(v))))
assert edge_set == {(0, 1)}
assert F.array_equal(F.astype(inv["user"], idtype), F.tensor([0], idtype))
assert F.array_equal(F.astype(inv["game"], idtype), F.tensor([0], idtype))
@unittest.skipIf(not F.gpu_ctx(), "only necessary with GPU")
@pytest.mark.parametrize(
"parent_idx_device",
[("cpu", F.cpu()), ("cuda", F.cuda()), ("uva", F.cpu()), ("uva", F.cuda())],
)
@pytest.mark.parametrize("child_device", [F.cpu(), F.cuda()])
def test_subframes(parent_idx_device, child_device):
parent_device, idx_device = parent_idx_device
g = dgl.graph(
(F.tensor([1, 2, 3], dtype=F.int64), F.tensor([2, 3, 4], dtype=F.int64))
)
print(g.device)
g.ndata["x"] = F.randn((5, 4))
g.edata["a"] = F.randn((3, 6))
idx = F.tensor([1, 2], dtype=F.int64)
if parent_device == "cuda":
g = g.to(F.cuda())
elif parent_device == "uva":
if F.backend_name != "pytorch":
pytest.skip("UVA only supported for PyTorch")
g = g.to(F.cpu())
g.create_formats_()
g.pin_memory_()
elif parent_device == "cpu":
g = g.to(F.cpu())
idx = F.copy_to(idx, idx_device)
sg = g.sample_neighbors(idx, 2).to(child_device)
assert sg.device == F.context(sg.ndata["x"])
assert sg.device == F.context(sg.edata["a"])
assert sg.device == child_device
if parent_device != "uva":
sg = g.to(child_device).sample_neighbors(
F.copy_to(idx, child_device), 2
)
assert sg.device == F.context(sg.ndata["x"])
assert sg.device == F.context(sg.edata["a"])
assert sg.device == child_device
if parent_device == "uva":
g.unpin_memory_()
@unittest.skipIf(
F._default_context_str != "gpu", reason="UVA only available on GPU"
)
@pytest.mark.parametrize("device", [F.cpu(), F.cuda()])
@unittest.skipIf(
dgl.backend.backend_name != "pytorch",
reason="UVA only supported for PyTorch",
)
@parametrize_idtype
def test_uva_subgraph(idtype, device):
g = create_test_heterograph(idtype)
g = g.to(F.cpu())
g.create_formats_()
g.pin_memory_()
indices = {"user": F.copy_to(F.tensor([0], idtype), device)}
edge_indices = {"follows": F.copy_to(F.tensor([0], idtype), device)}
assert g.subgraph(indices).device == device
assert g.edge_subgraph(edge_indices).device == device
assert g.in_subgraph(indices).device == device
assert g.out_subgraph(indices).device == device
if dgl.backend.backend_name != "tensorflow":
# (BarclayII) Most of Tensorflow functions somehow do not preserve device: a CPU tensor
# becomes a GPU tensor after operations such as concat(), unique() or even sin().
# Not sure what should be the best fix.
assert g.khop_in_subgraph(indices, 1)[0].device == device
assert g.khop_out_subgraph(indices, 1)[0].device == device
assert g.sample_neighbors(indices, 1).device == device
g.unpin_memory_()
if __name__ == "__main__":
test_edge_subgraph()
# test_uva_subgraph(F.int64, F.cpu())