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Commits on Jul 12, 2019

• Use pip to install newly troublesome randomcolor module.

  HazenBabcock

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• Use most recent image.

  HazenBabcock

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• Try next most recent osx image.

  HazenBabcock

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• Try to conda pip error by using 'conda update pip'.

  HazenBabcock

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• Use a more recent osx_image as it appears that travis-ci is never going to bother updating brew in the default image so that it works again.

  HazenBabcock

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  91a09c8

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• Fix comment.

  HazenBabcock

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• Add Wx / Wy plot.

  HazenBabcock

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Commits on Jul 3, 2019

• Update version.

  HazenBabcock

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• Add fitting classes for testing RQE compensation approaches.

  HazenBabcock

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Commits on Jun 26, 2019

• Add MLE_NC fitting option for testing. Fix bug in verbose mode, accessing the self.als_fit property which was removed.

  HazenBabcock

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Commits on Jun 21, 2019

• Update notebooks.

  HazenBabcock

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• Remove use of subprocess. Add margin setting.

  HazenBabcock

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• Rename subtractBackground() to estimateBackground().

  HazenBabcock

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• Remove old HDF5 files.

  HazenBabcock

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• Rename 'subtractBackgroud() to estimateBackground().

  HazenBabcock

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• Add FIXME.

  HazenBabcock

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• Update diagnostics notebooks.

  HazenBabcock

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• Factor out more of the redundant code. Add support for RQE correction testing.

  HazenBabcock

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Commits on Jun 20, 2019

• Factor out some of the common bits of the make_data modules.

  HazenBabcock

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• Output mean p found.

  HazenBabcock

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• Remove 'senstivity_correction' parameter.

  HazenBabcock

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• Add RQE correction testing.

  HazenBabcock

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  8c65af0

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• Stop using subprocess().

  HazenBabcock

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  71a03cc

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• Restore accidentally deleted initialization of peak starting (integer) locations.

  HazenBabcock

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  ab6c996

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• Update version.

  HazenBabcock

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• Use mFitEstimatePeakBackgroud() function to estimate initial value for BACKGROUND parameter.

  HazenBabcock

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• Remove 'sensitivity_correction' parameter. Fix comment.

  HazenBabcock

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  55fe0ed

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• Fix RQE test.

  HazenBabcock

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  3b3cb4c

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• RQE correct image when they are loaded. Change C library to handle RQE corrected images. Remove 'sensitivity_correction' parameter, decided this option wasn't worth the complexity. Add note about h…

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Commits on Jun 19, 2019

• Update version.

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Commits on Jun 18, 2019

• Add verbosity parameter. Clean up comment.

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• Gaussian finder should now handle RQE differences correctly. Fitter significance calculation still needs work.

  HazenBabcock

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Commits on Jun 11, 2019

• Add ability to test 'sensitivity_correction' parameter.

  HazenBabcock

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• Fix initial background estimate to correct for RQE. Fix initial height estimate to correct for RQE. Fix calculation of peak foreground sum RQE correction. Update tests.

  HazenBabcock

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Commits on Jun 10, 2019

• Add sensitivity correction for localization identification and fitting.

  HazenBabcock

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