Version 1.33

Version 1.33 -- January 22, 2021

• increased sensitivity for TLX1, TLX2, and TLX3 fusions
• added support for using only the first N reads in case for very large FASTQ files
• added a required dependency to FASTQTK tool: https://github.com/ndaniel/fastqtk
• fixed several major/minor bugs
• updated manual

Version 1.30

Version 1.30 -- December 14, 2020

• added support for Ensembl version 102
• added VCF format support for outputing the found candidate fusion genes
• increased sensitivity for TLX3 fusions
• fixed several major/minor bugs
• updated manual

Version 1.20

Version 1.20 -- November 8, 2019

• added support for Ensembl version 96, 97, and 98
• increased sensitivity by adding an extra anchor
• added --limitOutSJcollapsed for better control of STAR aligner
• fixed memory bug leading to seg-fault in STAR aligner
• improved handling of low entropy reads
• size of built files for different organisms has been reduced
• fixed several minor bugs
• updated manual

Version 1.10

Version 1.10 -- April 10, 2019

• added support for Ensembl version 91, 92, 93, 94, and 95
• fixed bug regarding randomness of mapping for Bowtie and STAR aligners
• fixed bug regarding low complexity of fusion junction sequences
• label for rt-circRNAs
• fixed several minor bugs
• updated manual

Version 1.00

Version 1.00 - December 8, 2017

• fixes for supporting Ensembl 90
• increased sensitivity for IGH fusions
• fixed bug regarding viral sequences when building new files for a new organism
• fixed several minor bugs
• updated manual