NAMESPACE

# Generated by roxygen2: do not edit by hand

export(compute_nsize)
export(download_vcf)
export(find_sumstats)
export(format_sumstats)
export(formatted_example)
export(get_genome_builds)
export(import_sumstats)
export(index_tabular)
export(infer_effect_column)
export(liftover)
export(list_sumstats)
export(load_snp_loc_data)
export(parse_logs)
export(read_header)
export(read_sumstats)
export(read_vcf)
export(standardise_header)
export(vcf2df)
export(write_sumstats)
import(R.utils)
importFrom(BSgenome,snpsById)
importFrom(BSgenome,snpsByOverlaps)
importFrom(Biostrings,IUPAC_CODE_MAP)
importFrom(Biostrings,unstrsplit)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,mapGenomeBuilds)
importFrom(GenomeInfoDb,rankSeqlevels)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqinfo)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,sort.GenomicRanges)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,tileGenome)
importFrom(IRanges,CharacterList)
importFrom(R.utils,copyFile)
importFrom(R.utils,gunzip)
importFrom(R.utils,isGzipped)
importFrom(RCurl,getURL)
importFrom(VariantAnnotation,ScanVcfParam)
importFrom(VariantAnnotation,VcfFile)
importFrom(VariantAnnotation,genome)
importFrom(VariantAnnotation,indexVcf)
importFrom(VariantAnnotation,makeVRangesFromGRanges)
importFrom(VariantAnnotation,rbind)
importFrom(VariantAnnotation,readVcf)
importFrom(VariantAnnotation,scanVcfHeader)
importFrom(VariantAnnotation,vcfFields)
importFrom(VariantAnnotation,vcfWhich)
importFrom(VariantAnnotation,writeVcf)
importFrom(data.table,":=")
importFrom(data.table,.SD)
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,key)
importFrom(data.table,rbindlist)
importFrom(data.table,set)
importFrom(data.table,setDF)
importFrom(data.table,setDT)
importFrom(data.table,setcolorder)
importFrom(data.table,setkey)
importFrom(data.table,setkeyv)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(data.table,setorderv)
importFrom(data.table,tstrsplit)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,mutate)
importFrom(dplyr,rowwise)
importFrom(dplyr,tibble)
importFrom(googleAuthR,gar_auth)
importFrom(httr,DELETE)
importFrom(httr,GET)
importFrom(httr,POST)
importFrom(httr,add_headers)
importFrom(httr,content)
importFrom(httr,status_code)
importFrom(httr,timeout)
importFrom(jsonlite,fromJSON)
importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(methods,show)
importFrom(methods,slotNames)
importFrom(parallel,mclapply)
importFrom(rtracklayer,end)
importFrom(rtracklayer,import.chain)
importFrom(rtracklayer,liftOver)
importFrom(rtracklayer,strand)
importFrom(rtracklayer,width)
importFrom(stats,complete.cases)
importFrom(stats,qchisq)
importFrom(stats,qnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringr,str_sub)
importFrom(utils,capture.output)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,type.convert)