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Achievement: YOLOAchievement: QuickdrawAchievement: Starstruckx3Achievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Starstruckx3Achievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

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neurolabusc/README.md

I am the endowed chair for brain imaging at the University of South Carolina in the Department of Psychology. I lead the Neuroimaging Core and am the Co-Project Lead for Center for the brain health project of the Center for the Study of Aphasia Recovery. I lead the development of the NiiVue neuroimaging visualization project.

I helped create and lead development of several popular GitHub repositories:

  • dcm2niix converts complicated and manufacturer-specific medical imaging data into the simpler NIfTI format popular in neuroimaging sciences. This converter extracts BIDS sequence details that allow reproducible science and curated data. The permissive license and minimal dependencies have led it to be included with many popular tools in the field.
  • MRIcron is a light-weight and popular cross-platform visualization tool for neuroimaging.
  • MRIcroGL uses the capabilities of modern graphics cards to generate compelling volume rendering visualizations of voxel-based images.
  • Surfice uses the capabilities of modern graphics cards to generate compelling surface rendering visualizations of mesh-based data.
  • nii2mesh converts voxel-based images to surface meshes and is can be used from a web page without requiring any software to be installed.
  • NiiVue is a modular visualization tool for neuroimaging meshes and volumes. It can be inserted into web-pages supporting cloud interface, edge computing and stanalone applications. I am co-originator and co-lead development with @hanayik.

Chris's GitHub stats

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  1. dcm_validate dcm_validate Public

    A directory with the entire collection of dcm_qa repositories

    1

  2. AppleSiliconForNeuroimaging AppleSiliconForNeuroimaging Public

    Review the challenges and potential of ARM-based Apple Silicon macOS for brain imaging research

    C 261 14

  3. nii2mesh nii2mesh Public

    Convert NIfTI volume to triangulated mesh using marching cubes

    C 153 18

  4. surf-ice surf-ice Public

    GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractog…

    Pascal 106 23

  5. MRIcron MRIcron Public

    Simple medical imaging visualization tool designed for NIfTI images. Includes dcm2nii for conversion of DICOM, Philips, and other proprietary formats.

    Pascal 68 25

  6. Fast-Quadric-Mesh-Simplification-Pascal- Fast-Quadric-Mesh-Simplification-Pascal- Public

    Mesh triangle reduction using quadrics (for Delphi, Lazarus and Pascal)

    Pascal 62 13