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Issues list

Nextflow process never exits after script execution is completed
#4558 opened Dec 6, 2023 by kmotoko
2 👀 3
Workflow inputs definition and schema lang/config
#4669 opened Jan 17, 2024 by bentsherman
5 👀 2
The nxf_unstage function unnecessarily copies input files that match output glob pattern.
#3995 opened Jun 2, 2023 by robsyme
2 👀 2
Provide google storage object as input to -params-file
#5390 opened Oct 10, 2024 by peter-fsdx
👀 1
[proposal] Expose ScriptParser as an extension point
#4869 opened Mar 31, 2024 by bentsherman
2 👀 1
Add warning when groupTuple is not complete lang/operators
#4592 opened Dec 15, 2023 by adamrtalbot
👀 1
google.location == us-east5 in Nextflow config leads to wrong machine type choices
#5602 opened Dec 12, 2024 by aaronegolden
👀 1
Add a best practice page describe how to run Python scripts docs
#5172 opened Jul 26, 2024 by pditommaso
@christopher-hakkaart
3 👀 1
failOnMismatch error shown when the pipeline fails before the join error-improvements lang/operators
#3828 opened Apr 3, 2023 by nvnieuwk
1 👀 1
GNU command line interface pinned
#556 opened Dec 19, 2017 by pditommaso
1
@bentsherman
26
Ability to use a time delay in 'errorStrategy' to re-submit scheduler jobs help wanted pinned
#721 opened May 30, 2018 by stevekm
17
Error message control lang/processes
#725 opened Jun 4, 2018 by shaze
14
"dry run" option?
#844 opened Aug 23, 2018 by jemunro
1
15
Execution metadata tracking and routing pinned
#903 opened Oct 22, 2018 by micans
37
nextflow pull: unexpected behaviour after using -r pinned software/git
#1334 opened Oct 14, 2019 by ewels
2
11
storeDir is not working
#1359 opened Nov 5, 2019 by lucacozzuto
16
Optional order for publishDir.
#1489 opened Feb 8, 2020 by srynobio
12
Output params file
#1515 opened Feb 28, 2020 by JoseEspinosa
24
Declarative DSL for piping high-volume data between tasks/processes on the same node pinned
#1822 opened Dec 2, 2020 by vinjana
@bentsherman
4
Params override is not honoured bug good first issue lang/config pinned
#1792 opened Nov 13, 2020 by pditommaso
1
1
Feature Request: recursive process lang/processes pinned
#1563 opened Apr 10, 2020 by lindenb
9
Add support for alternate formats to fromSra factory good first issue pinned
#1605 opened May 12, 2020 by pditommaso
7
Project currently is stuck on revision xxx when using -latest flag pinned software/git
#1670 opened Jul 9, 2020 by marcadella
2
13
The safegaurding of the params global variable from being overwritten by inclusion of config files or nextflow run arguments lang/config lang/modules pinned
#1778 opened Oct 28, 2020 by sohrab-saraei-at-blueprint-genetics
2
Is maxErrorRetry applied to K8sResponseException 500 (tunnel disconnect)? executor/k8s
#5604 opened Dec 13, 2024 by alanbchristie
6
ProTip! What’s not been updated in a month: updated:<2024-11-13.