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Add module custom_tabulargseatochip #7218

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Add module custom_tabulargseatochip #7218

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@suzannejin suzannejin commented Dec 13, 2024 •
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Add the TABULAR_GSEA_TO_CHIP module from nf-core/differentialabundance to nf-core/modules repository.

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@suzannejin
[tabulartogseachip] Add the TABULAR_TO_GSEA_CHIP
fe0271d 
module used in nf-core/differentialabundance.

This module was originally written by:
Co-authored-by: Jonathan Manning <[email protected]>
@suzannejin
[tabulartogseachip] add test
913d110
@suzannejin
[tabulartogseachip] pass test
bdedd9a
@suzannejin suzannejin linked an issue Dec 13, 2024 that may be closed by this pull request
Add TABULAR_TO_GSEA_CHIP to nf-core/modules #7200
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@pinin4fjords pinin4fjords Awaiting requested review from pinin4fjords

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Add TABULAR_TO_GSEA_CHIP to nf-core/modules
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