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bowtie parameters customization #356

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Cristinex opened this issue Jun 19, 2024 · 0 comments
Open

bowtie parameters customization #356

Cristinex opened this issue Jun 19, 2024 · 0 comments
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enhancement New feature or request

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@Cristinex
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Description of feature

Thank you for develop this pipeline. I would like to adjust the parameters used by bowtie and samtools so that the mismatch standard will be more strict. Where can I set this parameter? I found it really hard to find position where all parameters can be found. Could you fix this problem?
@Cristinex Cristinex added the enhancement New feature or request label Jun 19, 2024
@apeltzer apeltzer removed this from smrnaseq Aug 8, 2024
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@Cristinex