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norm.vcf
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norm.vcf
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##fileformat=VCFv4.1
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled likelihood">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Depth">
##contig=<ID=1,length=2147483647>
##contig=<ID=2,length=2147483647>
##contig=<ID=20,length=2147483647>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT XY00001
1 105 . TAAACCCTAAA TAA,TAACCCTAAA 999 PASS INDEL GT:PL:DP 1/2:0,3,5,3,5,5,3,5,3,5:1
2 1 . GGGCGTCTCATAGCTGGAGCAATGGCGAGCGCCTGGACAAGGGAGGGGAAGGGGTTCTTATTACTGACGCGGGTAGCCCCTACTGCTGTGTGGTTCCCCTATTTTTTTTTTTTTCTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAAGCTCCACCT ACGT 999 PASS INDEL GT:DP 1/2:1
2 101 . ATTTTTTTTTTTTT ATTTTTTTTTTTTTTT 999 PASS INDEL GT:DP 1/2:1
2 114 . TC TTCC,TTC 999 PASS INDEL GT:DP 1/2:1
2 115 . C T 999 PASS INDEL GT:DP 1/2:1
20 3 . G CT 999 PASS INDEL GT 1/1
20 3 . GATG GACT 999 PASS INDEL GT 1/1
20 5 . TGGG TAC,TG,TGGGG,AC 999 PASS INDEL GT:PL:DP 1/2:0,3,5,3,5,5,3,5,3,5:1
20 273 . CAAAAAAAAAAAAAAAAAAAAA CAAAAAAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAAAAAAAAA 999 PASS INDEL GT:PL:DP 1/2:0,3,5,3,5,5:1
20 274 . AAAAAAAAA AAAAAAAAAAAAAAAAAAA 999 PASS INDEL GT:PL:DP ./.:0,0,0:0
20 275 . A C 999 PASS INDEL GT:PL:DP 0/1:0,0,0:0
20 278 . AAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAA 999 PASS INDEL GT:PL:DP ./.:0,0,0:0