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README.md
README.md
 
 
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README.md

SlicerMorph Preferences

SlicerMorph preferences provides a convenient way for users to opt-in SlicerMorph specific customizations. Additional user specific customizations can be incorporated by editing the provided SlicerMorphRC.py file. For more information about how to customize your slicer via start up scripts, see the Slicer Script Repository.

Navigate to Edit->Application Settings->SlicerMorph tab and chech the box Use SlicerMorph Customizations. Then, click the Load now button next to the Customization file location. Restart Slicer for changes to take effect.

Download Directory: Overwrites the TEMP (Edit->Application Settings->Modules) and CACHE (Edit->Application Settings->Cache) settings of Slicer to be the specified location. All files downloaded via the SampleData module can be found in this folder.

If you want to revert to Slicer's default Application Settings, uncheck the Use SlicerMorph Customizations button and then hit "Restore Defaults" button and restart your Slicer session.

List of Keyboard Shortcuts provided by SlicerMorph Customization

  • p: Place a fiducial at the voxel under the mouse icon (both in 2D and 3D)
  • `: Move the active segment effect to right (Segment Editor)
  • ~: Move the active segment effect to the left (Segment Editor)
  • b: Change the layout to be Red Slice View Only
  • n: Change the layout to be Yellow Slice View Only
  • m: Change the layout to be Green Slice View Only
  • ,: Change the layout to be Four Up View
  • t: Toggle Persistent Mode on/off for Markups
  • l: Toggle Markups Lock on/off

List Other Customizations applied by SlicerMorph

  • Make Data module the default home module (instead of Welcome)
  • Volume Interpolation disabled (Volumes)
  • Default Volume Rendering methods set to GPU Raycasting (Volume Rendering)
  • Default Volume Rendering quality set to Normal (Volume Rendering)
  • Orthographic projection is used for 3D rendering (3D viewer)
  • Rulers are enabled for 2D and 3D viewers
  • Data Probe tab collapse
  • Volume and segmentation files are saved uncompressed by default (user can choose to compress via Save As)
  • Default 3D model save format is set to PLY.
  • Allow overlap between segments during segmentation (Segment Editor)