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@mcwdsi Medical College of Wisconsin Data Science Institute

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    39 repositories

    • dron

      Public
      Makefile
      •1•10•4•2•Updated Dec 24, 2024Dec 24, 2024

    • bam2tensor

      Public
      Convert methylation data to sparse objects for machine learning.
      machine-learningmethylation
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 6, 2024Dec 6, 2024

    • OMRSE

      Public
      The Ontology for Modeling and Representation of Social Entities
      obofoundry
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •7•14•32•0•Updated Nov 26, 2024Nov 26, 2024

    • rt2

      Public
      Referent Tracking 2.0
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • rt2n4j

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Oct 31, 2024Oct 31, 2024

    • rt2reflector

      Public
      Referent Tracking ETL for RT2.0
      Apache License 2.0
      •1•0•0•1•Updated Oct 31, 2024Oct 31, 2024

    • mcwdsi.github.io

      Public
      Website for the Data Science Institute at the Medical College of Wisconsin
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • rts_core

      Public
      Core referent tracking fundamentals
      Java
      •2•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • general-conversion-to-owl2

      Public
      Java code to convert conventional data into to OWL2
      Java
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • RTDB-Neo4J

      Public
      a Neo4J based implementation of Referent Tracking
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • iso8601

      Public
      Implementation of ISO 8601 date/time formatting standard
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • common_utils

      Public
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • obc-pubmed

      Public
      midasobc
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated May 21, 2024May 21, 2024

    • geographical-entity-ontology

      Public
      An ontology and inventory of geopolitical entities (such as sovereign states and their administrative subdivisions) as well as various geographical regions (including but not limited to the specific ones over which the governments have jurisdiction)
      Shell
      •
      Creative Commons Attribution 4.0 International
      •5•10•13•1•Updated Mar 31, 2024Mar 31, 2024

    • m1-df-only

      Public
      Implementation of M1 with data format matching only
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 17, 2024Mar 17, 2024

    • .github

      Public
      MCW DSI overview
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 6, 2023Oct 6, 2023

    • dron-chebi-mapper

      Public
      Calls BioPortal API to look for matches in ChEBI to DrOn ingredient terms derived from RxNorm
      translationchebidron
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • dron-query

      Public
      command line app for querying Drug Ontology using DL queries via reasoner
      dronowl-query
      Java
      •0•1•0•0•Updated Aug 17, 2023Aug 17, 2023

    • obc-ide-owl

      Public
      OWL files for the OBC.ide project
      mdcmidasobc
      1•1•1•0•Updated Dec 10, 2022Dec 10, 2022

    • mdc-sparql

      Public
      sparql queries for the midas digital commons
      mdcmidas
      0•0•0•0•Updated Dec 10, 2022Dec 10, 2022

    • ORCS

      Public
      Ontology for Representing CDM Semantics
      ontologycdm
      Makefile
      •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • midas-data-mapping-to-apollo-sv

      Public
      midasmccmidasowl
      0•0•0•0•Updated Nov 28, 2021Nov 28, 2021

    • mdc_search

      Public
      SPARQL queries for searching MIDAS Digital Commons for valid combinations of datasets and software
      mdcmidas
      JavaScript
      •0•0•0•0•Updated May 7, 2021May 7, 2021

    • mdc_meter

      Public
      SPARQL queries to compute FAIR metrics in MIDAS Digital Commons
      mdcmidas
      JavaScript
      •0•0•0•0•Updated May 7, 2021May 7, 2021

    • mdc_tree

      Public
      mdcmidas
      JavaScript
      •0•0•0•0•Updated May 7, 2021May 7, 2021

    • mcc-portal-rdf-constraints

      Public
      midasmcc
      0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • PCORowl

      Public archive
      Modelling the PCORnet CDM in an OBO Compliant OWL Ontology
      Python
      •
      Other
      •0•0•0•1•Updated Dec 23, 2020Dec 23, 2020

    • mdc-stardog-scripts

      Public
      Command line shell scripts for loading, backing up, saving off data from the Stardog backend of the MIDAS Digital Commons and OBC.ide
      mdcmidas
      Shell
      •0•0•0•0•Updated May 14, 2020May 14, 2020

    • mdc-dats-processor

      Public
      A parsing script written in Python 3.5 that parses DATS JSON files for datasets in the MIDAS Digital Commons.
      mdcmidas
      Python
      •0•0•0•0•Updated May 3, 2019May 3, 2019

    • demo-app-ontology

      Public
      Automatically exported from code.google.com/p/demo-app-ontology
      ontology
      0•0•0•0•Updated Nov 18, 2018Nov 18, 2018