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@ncbo National Center for Biomedical Ontology

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    14 repositories

    • bioportal_web_ui

      Public
      A Rails application for biological ontologies
      open-sourcemetadatabioinformaticsannotationrdfsemantic-webowlopen-scienceoboruby-on-rails
      JavaScript
      •
      Other
      •31•22•113•4•Updated Dec 20, 2024Dec 20, 2024

    • ncbo_cron

      Public
      Jobs that run on a regular basis in the NCBO infrastructure
      Ruby
      •
      Other
      •18•2•26•4•Updated Dec 13, 2024Dec 13, 2024

    • ontologies_linked_data

      Public
      Models and serializers for ontologies and related artifacts backed by 4store
      Ruby
      •
      Other
      •21•18•46•9•Updated Dec 13, 2024Dec 13, 2024

    • ontologies_api

      Public
      Hypermedia API for NCBO's ontology-related projects
      Ruby
      •
      Other
      •26•25•34•6•Updated Nov 27, 2024Nov 27, 2024

    • ncbo_ontology_recommender

      Public
      A ruby application that allows to obtain recommendations for the most relevant ontologies based on an excerpt from a biomedical text or a list of keywords
      Ruby
      •
      Other
      •7•5•4•2•Updated Nov 27, 2024Nov 27, 2024

    • ncbo_annotator

      Public
      To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.
      Ruby
      •
      Other
      •14•19•15•2•Updated Nov 27, 2024Nov 27, 2024

    • goo

      Public
      Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.
      Ruby
      •
      Other
      •13•15•27•3•Updated Nov 25, 2024Nov 25, 2024

    • ontologies_api_ruby_client

      Public
      A Ruby client for accessing NCBO's hypermedia api
      Ruby
      •
      Other
      •11•2•6•2•Updated Oct 28, 2024Oct 28, 2024

    • 4store

      Public
      4store for BioPortal
      C
      •
      GNU General Public License v3.0
      •73•3•0•0•Updated Aug 15, 2024Aug 15, 2024

    • biomixer

      Public
      BioMixer
      TypeScript
      •13•2•3•0•Updated Jun 20, 2024Jun 20, 2024

    • sparql-client

      Public
      SPARQL client for Ruby.
      Ruby
      •
      The Unlicense
      •56•4•1•0•Updated May 6, 2024May 6, 2024

    • owlapi_wrapper

      Public
      A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.
      Java
      •12•5•7•2•Updated Nov 4, 2023Nov 4, 2023

    • cube

      Public
      Cube: A system for time series visualization.
      JavaScript
      •
      Other
      •417•0•0•0•Updated Jul 30, 2014Jul 30, 2014

    • faraday-http-cache

      Public
      a faraday middleware that respects HTTP cache
      Ruby
      •
      Other
      •86•0•0•0•Updated Jul 16, 2013Jul 16, 2013