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Commits on Sep 22, 2024

• updated instructions

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Commits on Sep 20, 2024

• put some binary building instructions

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Commits on Sep 17, 2024

• add binary generation framework

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• Merge pull request #461 from pachterlab/devel

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• version bump

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• union, em priors (fix), shade, and no-jump features

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Commits on Sep 12, 2024

• update cmakelists for zlib

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Commits on Sep 10, 2024

• Fix threshold comparisons.

  

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Commits on Jul 20, 2024

• Merge pull request #448 from pachterlab/devel

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Commits on Jul 13, 2024

• Pass index.k to all plaintext_aux()

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Commits on May 16, 2024

• Merge pull request #441 from bound-to-love/master

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• Merge branch 'devel' into master

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Commits on May 14, 2024

• Update main.cpp

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• Update main.cpp

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• Update main.cpp

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Commits on May 6, 2024

• fix help menu

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Commits on May 5, 2024

• bump version

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• add cmake options to disable bifrost architecture-specific code

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Commits on May 4, 2024

• fix generating unnecessary output in quant-tcc

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• fix bug when writing index.saved with a d-list

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• Allow adjusting MAX_KMER_SIZE in cmake

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• some fixes in the codebase

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• Merge pull request #436 from bound-to-love/master

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Commits on May 3, 2024

• Update H5Writer.cpp

  bound-to-love

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• Update H5Writer.cpp

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  321a2b8

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• Update PlaintextWriter.cpp with kmer lemgth

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• Update PlaintextWriter.h add kmer length

  bound-to-love

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  34da3f7

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• Update main.cpp add kmer length to run info

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• Update main messages write out

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• Update main.cpp help output

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Commits on May 1, 2024

• Update so PacBio is not initialized with counts but ONT is for EM

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Commits on Apr 26, 2024

• Cleaned up debug output.

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• Update ProcessReads.cpp

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• Update ProcessReads.cpp

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• Update ProcessReads.cpp

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