NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method("$<-",sleuth)
S3method(bias_table,kallisto)
S3method(bias_table,sleuth)
S3method(get_bootstraps,kallisto)
S3method(get_bootstraps,sleuth)
S3method(head,kallisto)
S3method(is_kallisto_subset,kallisto)
S3method(is_kallisto_subset,sleuth)
S3method(models,sleuth)
S3method(models,sleuth_model)
S3method(plot_fld,kallisto)
S3method(plot_fld,sleuth)
S3method(print,kallisto)
S3method(print,sleuth)
S3method(print,sleuth_model)
S3method(subset_kallisto,kallisto)
S3method(subset_kallisto,sleuth)
S3method(summary,sleuth)
S3method(tests,sleuth)
S3method(transform_status,sleuth)
S3method(transform_status,sleuth_model)
export("transform_fun_counts<-")
export("transform_fun_tpm<-")
export(basic_filter)
export(bias_table)
export(counts_to_fpkm)
export(counts_to_tpm)
export(design_matrix)
export(enclosed_brush)
export(excluded_ids)
export(extract_model)
export(gene_from_gene)
export(get_bootstrap_summary)
export(get_bootstraps)
export(get_quantile)
export(is_kallisto_subset)
export(kallisto_table)
export(log_transform)
export(melt_bootstrap_sleuth)
export(models)
export(norm_factors)
export(plot_bootstrap)
export(plot_fld)
export(plot_group_density)
export(plot_loadings)
export(plot_ma)
export(plot_mean_var)
export(plot_pc_variance)
export(plot_pca)
export(plot_qq)
export(plot_sample_density)
export(plot_sample_heatmap)
export(plot_scatter)
export(plot_transcript_heatmap)
export(plot_vars)
export(plot_volcano)
export(read_kallisto)
export(read_kallisto_h5)
export(read_kallisto_tsv)
export(shrink_df)
export(sleuth_deploy)
export(sleuth_fit)
export(sleuth_gene_table)
export(sleuth_live)
export(sleuth_live_settings)
export(sleuth_load)
export(sleuth_lrt)
export(sleuth_prep)
export(sleuth_results)
export(sleuth_save)
export(sleuth_to_matrix)
export(sleuth_wt)
export(sliding_window_grouping)
export(subset_kallisto)
export(tests)
export(tpm_to_alpha)
export(transcripts_from_gene)
export(transform_status)
export(write_kallisto_hdf5)
import(dplyr)
import(ggplot2)
importFrom(data.table,fread)
importFrom(dplyr,"%>%")
importFrom(lazyeval,interp)
importFrom(lazyeval,lazy)
importFrom(rhdf5,h5write)