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Issues list

Header-only libraries still need to be installed
#3 by adamnovak was closed Feb 11, 2019
1
2
Build fails with clang
#13 by jeizenga was closed May 3, 2019
2
Can the graph_t handle paths with multiple occurrences of the same node?
#18 by jeizenga was closed May 3, 2019
2
Constructing graph with ID that doesn't start at 1 can be very slow
#30 by jeizenga was closed May 29, 2020
5
viz should represent relative orientation
#32 by ekg was closed Sep 7, 2020
2
viz should display path names enhancement New feature or request
#33 by ekg was closed Oct 25, 2020
1
@AndreaGuarracino
1
Installation problem with GOMP_parallel
#35 by evolgen was closed Jun 23, 2021
8
Can we use odgi to analyze graphs made from assemblers
#36 by hwalinga was closed Jun 23, 2021
8
use LMF for sorting
#37 by ekg was closed Jan 12, 2021
5
ODGI Bin: most links are useless
#48 by josiahseaman was closed Mar 3, 2020
1
Feature: Output Pangenome sequence
#49 by josiahseaman was closed Oct 16, 2019
1
Out of source build drops artifacts in source tree
#54 by adamnovak was closed Jun 28, 2021
5
Please make a release
#55 by subwaystation was closed Nov 13, 2019
12
dynamic path positions
#59 by ekg was closed Jun 23, 2021
7
--out flag doesn't work with matrix or bin
#60 by trgibbons was closed May 18, 2020
2
Links don't get reseted for each new path
#61 by joehagmann was closed Nov 26, 2019
2
viz testing B1phi1 data
#71 by subwaystation was closed Mar 23, 2020
26
viz testing of 12 Ath. thaliana genomes
#74 by subwaystation was closed Mar 2, 2020
22
Bring ODGI to Bioconda
#75 by subwaystation was closed Feb 6, 2020
1
@subwaystation
8
Show nucleotide position in each bin for each path
#78 by josiahseaman was closed Feb 25, 2020
5 tasks done
4
odgi build integrates sequence that is not present in any path
#81 by subwaystation was closed Feb 25, 2020
1
Playing around with 12 Arabidopsis thaliana genomes.
#84 by subwaystation was closed Jun 23, 2021
6
Make sequence field optional in odgi bin when output via --json
#86 by subwaystation was closed Mar 16, 2020
1
@subwaystation
1
Special case for bin_width=1 sequence output enhancement New feature or request
#88 by josiahseaman was closed Apr 2, 2020
@subwaystation
13
odgi build - make -o and --out mandatory arguments
#90 by subwaystation was closed Mar 24, 2020
2
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