Skip to content

Issues: pangenome/odgi

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
42 Open 107 Closed
42 Open 107 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

odgi extract error
#516 opened Jul 3, 2023 by GeorgeBGM
23
Sorting graph with -Y option triggers "Assertion `idx < this->size()' failed" error
#548 opened Jan 16, 2024 by sivico26
12
Race condition in ".pathnames.iv" file in position command
#493 opened Apr 12, 2023 by ASLeonard
12
odgi extract - please remove nodes that are not in specified BED range(s)
#526 opened Aug 24, 2023 by subwaystation
9
Visualise specific positions of a chromsome
#499 opened Apr 19, 2023 by hzlnutspread
9
building odgi with Cactus downloadPangenomeTools results in c++: fatal error: Killed signal terminated program cc1plus
#521 opened Jul 24, 2023 by SomePersonSomeWhereInTheWorld
8
Strange behavior in odgi build
#495 opened Apr 15, 2023 by anshumanmohan
7
Remove Complex Region of the Graph Pangenome
#572 opened May 7, 2024 by zhangyixing3
5
Trailing comma on P lines after pruning with odgi prune
#549 opened Jan 18, 2024 by sivico26
5
Specify the path color
#479 opened Feb 23, 2023 by minglibio
5
Extracting a sequence defined by a range on a path in the node space
#447 opened Sep 20, 2022 by sivico26
5
Problem using python bindings: difficulty compiling .so files
#425 opened Jun 24, 2022 by susan-garry
5
Odgi unchop performance for large graphs
#584 opened Jul 16, 2024 by sivico26
4
odgi untangle multiple reference file - potential bug
#581 opened Jul 8, 2024 by Catriona-Miller
3
unable to untangle injected graph
#543 opened Jan 4, 2024 by michael-olufemi
3
Defining reference path on graph
#532 opened Sep 28, 2023 by ManuelTgn
3
"Segmentation fault" when query node info using Python API
#442 opened Aug 26, 2022 by Griffan
3
Position command doesn't output all paths
#440 opened Aug 9, 2022 by ASLeonard
3
What is the recommended way to extract haplotype from the graph based on VCF traversal path?
#439 opened Aug 9, 2022 by Griffan
3
odgi extract somehow keeps the node which needs to be removed
#577 opened Jun 19, 2024 by yeeus
2
Extending existing graph with long reads
#518 opened Jul 12, 2023 by BaxW
2
Extending a region with edges!
#515 opened Jun 23, 2023 by coevolutionlab
2
Is odgi overlap optimized for reciprocal overlaps? enhancement New feature or request
#502 opened May 22, 2023 by cgroza
2
Overeager link-adding in odgi flip
#496 opened Apr 18, 2023 by anshumanmohan
2
atomicbitvector assertion error in untangle
#489 opened Mar 29, 2023 by esrice
2
ProTip! Type g i on any issue or pull request to go back to the issue listing page.