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Commits on Feb 7, 2023

• Bug fixes remove_samples_based_on_gini

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  BeGeiger

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Commits on Feb 3, 2023

• Bug fix; Adding missing connected signatures

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  BeGeiger

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• Bug fix when adding missing connected signatures

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  BeGeiger

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Commits on Sep 7, 2022

• Revert cluster metric in _gather_results()

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  Hu-JIN

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• Add parameter cluster_metric in DenovoSig

  Hu-JIN

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Commits on Sep 6, 2022

• Small edit to take care of sqrt of large integers

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  Hu-JIN

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Commits on May 4, 2022

• there can be mmrd in the tumor types that does not have mmrd in pcawg because of small number, allow mmrd signatures in all tumor types unless otherwise specified

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• catalog restrict for normalized W as well

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Commits on Apr 20, 2022

• Bug fix related to input of DenovoSig

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  Hu-JIN

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Commits on Apr 19, 2022

• Update setup.py

  Hu-JIN

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• Update setup.py

  Hu-JIN

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• Update README.md

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• Change default parameters

  Hu-JIN

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• Update examples

  Hu-JIN

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Commits on Apr 18, 2022

• Update tumor type vs signature list

  Hu-JIN

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• Update COSMIC-MuSiCal_v3p2_SBS_WGS.csv

  Hu-JIN

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• Update LICENSE

  Hu-JIN

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• Swap the order of match and refit when selecting the sparsest result

  Hu-JIN

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• Change name of clear_W_s to clean_W_s

  Hu-JIN

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Commits on Apr 13, 2022

• Change default values

  Hu-JIN

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Commits on Apr 12, 2022

• Turn off clear_W_s when it is ID signatures

  Hu-JIN

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Commits on Apr 5, 2022

• Remove obsolete codes

  Hu-JIN

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• Add an option to skip _clear_W_s()

  Hu-JIN

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• Add some comments

  Hu-JIN

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• Remove obsolete codes

  Hu-JIN

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• Add some error catching in validate and validate_grid

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  Hu-JIN

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Commits on Apr 4, 2022

• Add some comments

  Hu-JIN

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• Update denovo.py

  Hu-JIN

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• Update method for selecting the best grid point

  Hu-JIN

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Commits on Apr 3, 2022

• Fix another bug in handling connected_sigs in refitting

  Hu-JIN

  committed
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• Fix a bug in handling connected_sigs in refitting

  Hu-JIN

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• Handle connected_sigs in refitting

  Hu-JIN

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• Modify match in terms of connected_sigs

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  Hu-JIN

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• Add SIGS_ASSOCIATED_DICT

  Hu-JIN

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• Update comment

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