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Commits on Apr 23, 2024

• Merge pull request #75 from parklab/dev

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• Update README.md

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• Adding an example notebook for preprocessing

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Commits on Feb 29, 2024

• Merge pull request #72 from parklab/dev

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• Fix an issue where data files are not installed

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Commits on Feb 15, 2024

• Merge pull request #70 from parklab/dev

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• Update README.md

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Commits on Feb 12, 2024

• Merge pull request #69 from parklab/dev

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• Update musical_logo.png

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• Update MuSiCal logo

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Commits on Dec 4, 2023

• Merge pull request #68 from parklab/dev

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Commits on Apr 6, 2023

• Update preprocessing.py to change a default value

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Commits on Feb 7, 2023

• Merge pull request #66 from parklab/dev

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• Turned tabs to spaces

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• Merge pull request #65 from parklab/dev

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• Fixed indentation

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• Merge pull request #64 from parklab/dev

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• Minor change to allow wider use of gini()

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• Indentation fixed

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• Bug fixes remove_samples_based_on_gini

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Commits on Feb 3, 2023

• Merge pull request #63 from parklab/dev

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• Bug fix; Adding missing connected signatures

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• Bug fix when adding missing connected signatures

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Commits on Sep 7, 2022

• Revert cluster metric in _gather_results()

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• Add parameter cluster_metric in DenovoSig

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Commits on Sep 6, 2022

• Small edit to take care of sqrt of large integers

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Commits on May 4, 2022

• there can be mmrd in the tumor types that does not have mmrd in pcawg because of small number, allow mmrd signatures in all tumor types unless otherwise specified

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• catalog restrict for normalized W as well

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Commits on Apr 20, 2022

• Merge pull request #59 from parklab/dev

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• Bug fix related to input of DenovoSig

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Commits on Apr 19, 2022

• Merge pull request #58 from parklab/dev

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• Update setup.py

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• Merge pull request #57 from parklab/dev

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• Update setup.py

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• Merge pull request #56 from parklab/dev

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