DESCRIPTION

Package: CMScaller
Title: CMScaller: an R package for consensus molecular subtyping of colorectal cancer pre-clinical models
Description: Colorectal cancers (CRCs) can be divided into four gene expression-based and biologically distinct consensus molecular subtypes (CMS). This classification is clinically relevant and provides both prognostic stratification of the patients and a potential basis for stratified treatment. CMScaller provides CMS classification of pre-clinical models such as cell lines, organoids and patient derived xenografts based on a microarray or RNA-sequencing gene expression data.
Version: 0.99.2
Date: 2017-10-23
Authors@R: c(person("Peter W.", "Eide", 
                    email = "peteid@rr-research.no",
                    role = c("aut", "cre")),
            person("Anita Sveen",
                    email = "ansvee@rr-research.no",
                    role = c("aut")))
Depends:
    R (>= 3.4)
Imports:
    Biobase,
    graphics,
    stats,
    utils,
Suggests:
    BiocStyle,
    commonmark,
    edgeR,
    knitr,
    limma,
    parallel,
    plotrix,
    snow,
    testthat,
    xml2
biocViews:
    Software,
    GeneExpression,
    StatisticalMethod,
    Classification
LazyData: TRUE
Encoding: UTF-8
ByteCompile: TRUE
License: GPL-3 + file LICENSE
RoxygenNote: 7.1.0
VignetteBuilder: knitr