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59 Open 101 Closed
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Issues list

bamtools_api_export.h not found
#239 opened Aug 5, 2024 by wook2014
2
infinite loop in const std::string FilterTool::FilterToolPrivate::GetScriptContents() on s390x, arm, ppc64el
#237 opened Jul 9, 2024 by vpa1977
1
bamtools crashes/corrupts output data on s390x
#235 opened Jul 8, 2024 by vpa1977
1
heap-buffer-overflow in bam/BamReader_p.cpp:507:30, BamReaderPrivate::LoadReferenceData()
#234 opened Jan 4, 2024 by schsiung
global-buffer-overflow in BamReader_p.cpp:462:23, BamTools::Internal::BamReaderPrivate::LoadNextAlignment(BamTools::BamAlignment&)
#233 opened Jan 4, 2024 by schsiung
bamtools random reads are highly skewed towards small chromosomes
#230 opened Nov 12, 2023 by benbfly
Is there any way to get total number of reads in the alignment bam file?
#228 opened Sep 2, 2022 by yazhinia
Unnecessary space in BamAlignment object?
#226 opened Apr 22, 2022 by rlorigro
Allow fetching read name field without fetching other string fields?
#225 opened Apr 21, 2022 by rlorigro
1
Documentation URL broken
#215 opened Jun 25, 2021 by telatin
1
bamtools split ERROR: could not open basecalls.sort.REF_NM_001019297.2.bam for writing.
#198 opened Oct 31, 2019 by weir12
1
bamtools fails to open stdin when running in a Node environment
#192 opened May 29, 2019 by anderspitman
feature request: allow custom SM tag in the merged bam header
#191 opened May 15, 2019 by sclan
queryBases filter with pattern returns no matching reads
#190 opened May 5, 2019 by adomingues
RefLength of BamMultiReader does not appear to be correct
#187 opened Mar 13, 2019 by SebastianHollizeck
1
big contig
#184 opened Nov 21, 2018 by lw3259111
htslib is 10 times faster than bamtools
#183 opened Sep 3, 2018 by beaulian
does bamtools stats consider supplementary alignment
#175 opened Feb 8, 2018 by prasundutta87
core dumped when converting to BED with unmapped read
#162 opened Oct 25, 2017 by khillion
CRAM file support
#149 opened Sep 22, 2017 by jjfarrell
2
wrong reference length reported on big endian archs
#147 opened Aug 8, 2017 by satta
Possible error
#145 opened Jul 24, 2017 by kemin711
4
Incorrect bin field set in bam file
#144 opened Jun 19, 2017 by jrderuiter
Filter by alignment score [feature request]
#141 opened Dec 21, 2016 by sjackman
3
wiki modification proposal (building and installing step)
#138 opened Nov 30, 2016 by ltaulell
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