environment.yml

# You can use this file to create a conda environment for this pipeline:
#   conda env create -f environment.yml
name: nf-core-hic-1.3.0
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - conda-forge::python=3.7.6
  - pip=20.0.1
  - conda-forge::tbb=2020.2=hc9558a2_0 
  - conda-forge::scipy=1.4.1
  - conda-forge::numpy=1.18.1
  - bioconda::iced=0.5.6
  - bioconda::bx-python=0.8.8
  - bioconda::pysam=0.15.4
  - conda-forge::pymdown-extensions=7.1
  - bioconda::cooler=0.8.6
  - bioconda::cooltools=0.4.0
  - bioconda::bowtie2=2.3.5
  - bioconda::samtools=1.9
  - bioconda::multiqc=1.8

## Dev tools
  - bioconda::hicexplorer=3.4.3
  - bioconda::bioconductor-hitc=1.32.0
  - conda-forge::r-optparse=1.6.6
  - bioconda::ucsc-bedgraphtobigwig=357
  - conda-forge::cython=0.29.19
  - pip:
    - fanc==0.8.30