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Commits on Mar 23, 2023

• Remove bogus first# and selected# selector forms.

  brianwalenz

  committed
  46ecdfb

• Allow output= and print= forms.

  brianwalenz

  committed
  6afbb7f

• Fix -m and -t so they do something.

  brianwalenz

  committed
  7b1aa36

• Incomplete/inconsistent work-in-progress on meryl2 docs.

  brianwalenz

  committed
  faf88b0

Commits on Mar 20, 2023

• Older meryl2 changes of unknown use.

  brianwalenz

  committed
  5ab9d91

Commits on Feb 26, 2023

• Update utility/ to fix error allocating bitArray bits in the constructor. Issue marbl/merqury#98.

  brianwalenz

  committed
  4fa1418

Commits on Feb 21, 2023

• Don't reset the 'compress' flag after each file. Thanks, @maickrau!

  brianwalenz

  committed
  f3b85d3

Commits on Dec 16, 2022

• Fix paths to libbacktrace.

  brianwalenz

  committed
  97d5923

Commits on Oct 5, 2022

• Import meryl2 from a14394c.

  brianwalenz

  committed
  69c839c

• Update meryl-utility to remove kmers::v1 from inline namespace.

  brianwalenz

  committed
  7693160

Commits on Oct 4, 2022

• Update meryl-utility to inlcude kmers-v2.

  brianwalenz

  committed
  50ba446

Commits on Sep 28, 2022

• Update to namespace-aware meryl-utility.

  brianwalenz

  committed
  7f5cd3d

Commits on Aug 23, 2022

• Fix counting queries-per-base.

  brianwalenz

  committed
  d88ea50

Commits on Aug 10, 2022

• Add position-aware lookup driver.

  brianwalenz

  committed
  2bcdc3b

Commits on Apr 7, 2022

• Avoid memory leak during configuration.

  Show description for edfd158
  

  mphschmitt

  authored and

  brianwalenz

  committed
  edfd158

• Fix help typos.

  Show description for b16772b
  

  mphschmitt

  authored and

  brianwalenz

  committed
  b16772b

Commits on Jan 12, 2022

• Update comment about makefile hack for canu support.

  brianwalenz

  committed
  c6a39cf

Commits on Jan 11, 2022

• Skip complex mode configuration for small kmer sizes. Issue marbl#26.

  brianwalenz

  committed
  1ef7da4

• Disable debug info.

  brianwalenz

  committed
  22106e7

Commits on Nov 3, 2021

• Add warning about memory estimates being too high.

  brianwalenz

  committed
  d8f336f

• Update utility/ to fix crash loading kmer tables and memory usage of same.

  brianwalenz

  committed
  51fad4b

Commits on Jul 31, 2021

• Fix/simplify setting of thread limit.

  brianwalenz

  committed
  1d45750

Commits on Jun 24, 2021

• Make -estimate work standalone (no output or report options needed).

  brianwalenz

  committed
  957a423

Commits on May 17, 2021

• Add some (incomplete) documentation.

  brianwalenz

  committed
  616743d

• A simple greedy kmer assembler.

  brianwalenz

  committed
  3323380

• Update utility: big bug fix for wide kmer lookups.

  brianwalenz

  committed
  ba4cc14

• Add -bed-runs option.

  brianwalenz

  committed
  24f25aa

• Fix glaring error in -wig-depth that would fail to find some kmers in non-canonical databases.

  brianwalenz

  committed
  6a08212

• Be a bit better at showing where test failures occur.

  brianwalenz

  committed
  bb77ede

• Fail to build the command if the mer size is set inconsistently.

  brianwalenz

  committed
  0510571

• Add accessors for merylOperation _maxMemory and _maxThreads.

  brianwalenz

  committed
  14362b2

Commits on Apr 16, 2021

• update description to v1.3

  arangrhie

  authored
  61c7ffb

• Add test script for meryl-lookup.

  brianwalenz

  committed
  509eec1

• Update utility/ and the new FASTA/FASTQ writers.

  brianwalenz

  committed
  006824c

Commits on Apr 13, 2021

• Add missing statifyOSX.py.

  brianwalenz

  committed
  885bc22

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