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Commits on Oct 8, 2020

• Revert "Update annotate-maf-wrapper.R"

  Show description for 41a01fe
  

  svural

  committed
  41a01fe

• Revert "removed the runtype from sample ids in cncf output file"

  Show description for f3d0da4
  

  svural

  committed
  f3d0da4

• removed the runtype from sample ids in cncf output file

  

  svural

  committed
  1c72905

Commits on Aug 14, 2020

• Update annotate-maf-wrapper.R

  Show description for caef499
  cband

  authored
  caef499

Commits on Jul 9, 2020

• upgrading version to 2.0.8

  cband

  committed
  4b2757b

• Merge branch 'master' of github.com:mskcc/facets-suite

  cband

  committed
  1a806c7

• syntax error

  cband

  committed
  e8bb923

Commits on Jul 8, 2020

• Merge pull request mskcc#40 from mskcc/dockerfile

  Show description for 37b0780
  cband

  authored
  37b0780

Commits on Jun 22, 2020

• adding FGA to check_fit output

  cband

  committed
  5872e69

Commits on Jun 19, 2020

• add Facets installation to Dockerfile

  stevekm

  committed
  eaefcb3

Commits on Jun 18, 2020

• fix Dockerfile to use current repo for Facets

  stevekm

  committed
  de9d148

Commits on Jun 6, 2020

• forgot to update the version #

  cband

  committed
  f566eb5

Commits on Jun 1, 2020

• bug fix in gene and arm level scripts where cn_state is set to INDETERMINATE when lcn is NA or when tcn > 9

  cband

  committed
  478c5a2

Commits on May 27, 2020

• bug fix

  cband

  committed
  10716cc

Commits on May 26, 2020

• adding clonality flag

  cband

  committed
  d64f05e

Commits on Apr 27, 2020

• removed normalization for dipLogR to 0; fixed plotting issue with y-axis for icn; fixed issue with calculating discordant tcn

  cband

  committed
  f2b3a46

Commits on Apr 20, 2020

• another fix to logic at gene-level to match what was in V1 of this script

  cband

  committed
  f8d4faa

Commits on Apr 19, 2020

• versioning to 2.0.5

  cband

  committed
  5f25ca9

• versioning to 2.0.5

  cband

  committed
  9822470

• updating annotate-maf-wrapper to use Rdata file corresponding to the input seg/Rdata file. fixing github issue # 35 in gene-level function

  cband

  committed
  b5e3b5c

Commits on Mar 12, 2020

• Merge pull request mskcc#32 from mskcc/arichards2564-cncfpurity

  Show description for 8a6e371
  cband

  authored
  8a6e371

Commits on Mar 11, 2020

• Purity from Rdata when Input is cncf

  Show description for 406c146
  arichards2564

  authored
  406c146

Commits on Mar 3, 2020

• versioning 2.0.4

  cband

  committed
  b197695

Commits on Mar 2, 2020

• fixed plotting issues (courtesy of Ryan Ptashkin); added functionality in annotate-maf-wrapper.R to accept .cncf.txt or .cncf.edited.txt

  cband

  committed
  5005fa4

Commits on Feb 23, 2020

• upping the version

  cband

  committed
  809c55e

• added new qc metrics to accommodate new filters in facets_qc in the facets-preview pkg

  cband

  committed
  772876b

Commits on Feb 12, 2020

• Update README.md

  cband

  authored
  633c6f0

Commits on Feb 11, 2020

• Merge pull request mskcc#30 from taylor-lab/master

  Show description for 1c1fdf6
  ckandoth

  authored
  1c1fdf6

Commits on Feb 10, 2020

• Merge branch 'master' of github.com:taylor-lab/facets-suite

  cband

  committed
  4cbde6d

• bug fix

  cband

  committed
  1f5b1c5

Commits on Feb 3, 2020

• Update README.md

  kpjonsson

  authored
  5e9c401

Commits on Feb 1, 2020

• versioning

  cband

  committed
  57a8a1b

• adding wgd to output; tweaking annotation wrapper to allow legacy output

  cband

  committed
  10bde31

Commits on Jan 30, 2020

• Update README.md

  cband

  authored
  78ac528

Commits on Jan 29, 2020

• requiring facets lib

  cband

  authored
  f60a536

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