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Commits on Jan 26, 2025

• Update RNAformer to output base pairs and structure in dot-bracket notation (bgruening#1571)

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  ivelet

  and

  bgruening

  authored
  81ae3a5

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Commits on Jan 20, 2025

• Set device to be determined by TabPFN (bgruening#1570)

  anuprulez

  authored
  c1c3b6d

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Commits on Jan 17, 2025

• TabPFN: Add Regression and option to have no labels for test data (bgruening#1567)

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  anuprulez

  authored
  e87b82b

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Commits on Jan 15, 2025

• add test for prc curve (bgruening#1566)

  anuprulez

  authored
  0544107

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• Merge pull request bgruening#1533 from anuprulez/tabpfn

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  bgruening

  authored
  bce8b02

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• Apply suggestions from code review

  bgruening

  authored
  7fe2287

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• fix linting error

  anuprulez

  committed
  a6e2e80

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• remove unused test data

  anuprulez

  committed
  e5ab02b

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• update test

  anuprulez

  committed
  be6b73c

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• Merge branch 'bgruening:master' into tabpfn

  anuprulez

  authored
  2fc47e7

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Commits on Jan 14, 2025

• Merge pull request bgruening#1565 from natefoo/splitfasta-limit

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  bgruening

  authored
  49709e6

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• Apply suggestions from code review

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  natefoo

  and

  bgruening

  authored
  627ae46

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• fix lint

  bgruening

  authored
  9857330

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• Fix linting

  natefoo

  committed
  99ffb2b

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• Add an admin-definable limit to the number of outputs rbc_splitfasta will create

  natefoo

  committed
  b7536be

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• update test data

  bgruening

  committed
  a2a8306

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• modify for latest tabpfn

  anuprulez

  committed
  004465a

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• Merge branch 'bgruening:master' into tabpfn

  anuprulez

  authored
  29b1080

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Commits on Jan 8, 2025

• Updating tools/flexynesis from version 0.2.10 to 0.2.12 (bgruening#1563)

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  4 peopleauthored
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Commits on Dec 14, 2024

• deprecate augustus (bgruening#1559)

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  bernt-matthias

  authored
  373c81f

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Commits on Dec 13, 2024

• Add wordcloud (bgruening#1552)

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  reytakop

  and

  bgruening

  authored
  6d08a14

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Commits on Dec 12, 2024

• Gfastats - correct format issue (bgruening#1558)

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  Delphine-L

  authored
  5ab6f94

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Commits on Dec 10, 2024

• correct the link the music repo in .shed.yml (bgruening#1557)

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  pavanvidem

  authored
  fdbd4a8

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Commits on Dec 9, 2024

• Diff add -y parameter (bgruening#1555)

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  RZ9082

  and

  bgruening

  authored
  1a6c4a7

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Commits on Dec 4, 2024

• Update JBrowse2 to 2.17.0 (bgruening#1553)

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  fubar2

  authored
  35f23ea

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• fix fly datatype (bgruening#1556)

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  bernt-matthias

  authored
  fb12992

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Commits on Dec 2, 2024

• Improve FLUX tool for output label and prompt display (bgruening#1551)

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  arash77

  authored
  d9ac789

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Commits on Nov 22, 2024

• Fix package requirements for Flux tool (bgruening#1550)

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  arash77

  and

  bgruening

  authored
  f8d8a93

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Commits on Nov 20, 2024

• Drop repository dependencies for infernal tools (bgruening#1549)

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  mvdbeek

  authored
  4fecc1b

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Commits on Nov 19, 2024

• Updating tools/cellprofiler_v4 from version 4.2.7 to 4.2.8 (bgruening#1547)

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  gxydevbot

  and

  planemo-autoupdate

  authored
  77c6761

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• update ftp link in blobtoolkit.xml (bgruening#1546)

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  mthang

  and

  mthang

  authored
  c25f042

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Commits on Nov 11, 2024

• Cmsearch: added missing args to command (bgruening#1328)

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  3 peopleauthored
  09c1d4a

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Commits on Nov 6, 2024

• Add bio.tools entry to MuSiC deconvolution tools (bgruening#1543)

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  mtekman

  and

  nomadscientist

  authored
  7b4e1e8

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• Update gfastats for bug fix (bgruening#1542)

  SaimMomin12

  authored
  7de9687

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Commits on Oct 30, 2024

• Add pytorch-cuda requirement to flux tool (bgruening#1538)

  arash77

  authored
  61ef690

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