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.travis.yml
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.travis.yml
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language: generic
dist: bionic
cache:
pip: true
addons:
apt:
packages:
- libxkbcommon-x11-0
- libxcb*
- libosmesa6
- libglx-mesa0
- libopengl0
- libglx0
- libdbus-1-3
env:
# OPENBLAS_NUM_THREADS=1 avoid slowdowns:
# https://github.com/xianyi/OpenBLAS/issues/731
global: PYTHON_VERSION=3.7 DISPLAY=:99.0 MNE_LOGGING_LEVEL=warning
CONDA_VERSION=">=4.3.27" OPENBLAS_NUM_THREADS=1 PYTHONUNBUFFERED=1
matrix:
include:
# Linux
- os: linux
env: CONDA_ENV="environment.yml"
# PIP + non-default stim channel + log level info
- os: linux
env: MNE_STIM_CHANNEL=STI101 MNE_LOGGING_LEVEL=info
language: python
python: "3.8"
# Old dependencies
- os: linux
env: PYTHON_VERSION=3.6
CONDA_DEPENDENCIES="numpy=1.15.4 scipy=1.1 matplotlib=3.0.3 pandas=0.23.4 scikit-learn=0.20.2"
# Minimal (runs with and without testing data)
- os: linux
env: DEPS=minimial
CONDA_DEPENDENCIES="numpy scipy matplotlib"
MNE_DONTWRITE_HOME=true MNE_FORCE_SERIAL=true MNE_SKIP_NETWORK_TEST=1
# Setup anaconda
before_install:
- /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render -noreset;
- |
if [ -z "$CONDA_ENV" ] && [ -z "$CONDA_DEPENDENCIES" ]; then
pip uninstall -yq numpy
pip install -i "https://pypi.anaconda.org/scipy-wheels-nightly/simple" --pre numpy
pip install -f "https://7933911d6844c6c53a7d-47bd50c35cd79bd838daf386af554a83.ssl.cf2.rackcdn.com" scipy pandas scikit-learn matplotlib h5py Pillow
pip install https://github.com/pyvista/pyvista/zipball/master
pip install https://github.com/pyvista/pyvistaqt/zipball/master
pip install --upgrade -r requirements.txt
else
git clone https://github.com/astropy/ci-helpers.git
source ci-helpers/travis/setup_conda.sh
if [ ! -z "$CONDA_ENV" ]; then
conda env update --file $CONDA_ENV
conda activate mne
pip uninstall -yq mne
fi
fi
# Always install these via pip so we get the latest possible versions (testing bugfixes)
- pip install --upgrade -r requirements_testing.txt codecov
- if [ "${DEPS}" != "minimal" ]; then
pip install nitime;
fi
# Don't source mne_setup_sh here because changing PATH etc. can't be done in a script
- if [ "${DEPS}" != "minimal" ]; then
source tools/get_minimal_commands.sh;
mne_surf2bem --version;
fi;
install:
# Suppress the parallel outputs for logging cleanliness
- python setup.py build
- python setup.py install
- mne sys_info
- python -c "import numpy; numpy.show_config()"
- SRC_DIR=$(pwd)
- cd ~
# Trigger download of testing data
- if [ "${DEPS}" != "minimal" ]; then
python -c 'import mne; mne.datasets.testing.data_path(verbose=True)';
fi;
- cd ${SRC_DIR}
script:
- echo "Print locale "
- locale
- echo "Other stuff"
# OSX runs ~2x slower than Linux on Travis, so skip any slow ones there
# Until https://github.com/numpy/numpy/issues/15580 is resolved we also
# need the --pre wheels to skip slow ones.
- CONDITION='not ultraslowtest';
# Determine directories to test (could use SPLIT=0 SPLIT=1 but currently
# we are fast enough, so disable it)
- if [ -z ${SPLIT} ]; then
USE_DIRS="mne/";
else
if [ "${SPLIT}" == "0" ]; then
MNE_DIRS=". beamformer channels commands connectivity datasets decoding forward gui inverse_sparse io";
elif [ "${SPLIT}" == "1" ]; then
MNE_DIRS="minimum_norm preprocessing realtime simulation stats time_frequency viz";
elif [ "${SPLIT}" == "2" ]; then
MNE_DIRS=".";
else
MNE_DIRS="beamformer channels commands connectivity datasets decoding forward gui inverse_sparse io";
fi;
USE_DIRS="";
for DIR in ${MNE_DIRS}; do
if [ "${DIR}" == "." ]; then
USE_DIRS="mne/tests mne/*.py ${USE_DIRS}";
else
USE_DIRS="mne/${DIR}/ ${USE_DIRS}";
fi;
done;
fi;
# Remove numpydoc tests on older Python (builtin docstrings not as good)
- if [ "${PYTHON_VERSION}" == "3.6" ]; then
pip uninstall -yq numpydoc;
fi;
# Test run_tests_if_main
- if [ "${DEPS}" == "minimal" ]; then
pip uninstall -yq mne;
pip install -e .;
python mne/tests/test_evoked.py;
fi;
- echo 'pytest -m "${CONDITION}" --tb=short --cov=mne -vv ${USE_DIRS}'
- pytest -m "${CONDITION}" --tb=short --cov=mne -vv ${USE_DIRS}
# run the minimal one with the testing data
- if [ "${DEPS}" == "minimal" ]; then
export MNE_SKIP_TESTING_DATASET_TESTS=false;
python -c 'import mne; mne.datasets.testing.data_path(verbose=True)';
fi;
- if [ "${DEPS}" == "minimal" ]; then
pytest -m "${CONDITION}" --tb=short --cov=mne -vv ${USE_DIRS};
fi;
after_script:
# Need to run from source dir to exectue "git" commands
- cd ${SRC_DIR};
- codecov;