stochastic.rst

Stochastic simulations

Stochastic simulations with compartment models and age structure. Has Gillespie and tau-leaping implemented.

A list of methods for stochastic simulations of age-structured compartment models along with link to notebook examples is given below.

Model

.. autoclass:: pyross.stochastic.Model
    :members:

• Link to example notebook

Spp

.. autoclass:: pyross.stochastic.Spp
    :members:

• Link to example notebook

SppQ

.. autoclass:: pyross.stochastic.SppQ
    :members:

• Link to example notebook

SIR

.. autoclass:: pyross.stochastic.SIR
    :members:

• Link to example notebook

SIkR

.. autoclass:: pyross.stochastic.SIkR
    :members:

• Link to example notebook

SEIR

.. autoclass:: pyross.stochastic.SEIR
    :members:

• Link to example notebook

SEAIRQ

.. autoclass:: pyross.stochastic.SEAIRQ
    :members:

• Link to example notebook

SEAIRQ_testing

.. autoclass:: pyross.stochastic.SEAIRQ_testing
    :members:

stochastic_integration

.. autoclass:: pyross.stochastic.stochastic_integration
    :members: