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run.make.samples.sh
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run.make.samples.sh
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mkdir -p input
cd input
../apps/RSEM/rsem-simulate-reads ../reference/rsem/rsem /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.stat/rsem.model /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.isoforms.results 0.2 50000 A01
../apps/RSEM/rsem-simulate-reads ../reference/rsem/rsem /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.stat/rsem.model /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.isoforms.results 0.22 50000 A02
../apps/RSEM/rsem-simulate-reads ../reference/rsem/rsem /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.stat/rsem.model /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.isoforms.results 0.25 50000 A03
../apps/RSEM/rsem-simulate-reads ../reference/rsem/rsem /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.stat/rsem.model /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.isoforms.results 0.3 50000 B01
../apps/RSEM/rsem-simulate-reads ../reference/rsem/rsem /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.stat/rsem.model /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.isoforms.results 0.32 50000 B02
../apps/RSEM/rsem-simulate-reads ../reference/rsem/rsem /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.stat/rsem.model /scratch/projects/aguiar/RNASEQ_data/rsem.PK01/rsem.isoforms.results 0.35 50000 B03