Skip to content

Issues: robinweide/GENOVA

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
62 Open 225 Closed
62 Open 225 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error in insulation_score()
#362 opened Oct 7, 2024 by gxygogogo updated Jan 13, 2025
10
How to add PCA1 value in Saddle plots
#311 opened Oct 16, 2022 by liufuyan2016 updated Dec 20, 2024
1
ARA contrast plot results consultation
#365 opened Nov 25, 2024 by YuZhang337 updated Nov 25, 2024
Problem when reading in the second .hic file
#324 opened Apr 30, 2023 by ReinhardUllmann updated Nov 21, 2024
6
How to convert virtual4c result to bigwig track
#364 opened Nov 5, 2024 by luckysardar updated Nov 5, 2024
Plotting issues (compartment_matrixplot, ATA plot)
#360 opened Aug 2, 2024 by tinyimp80 updated Nov 5, 2024
1
Balancing for mcool files while loading contacts？
#361 opened Sep 11, 2024 by MaybeBio updated Oct 31, 2024
5
calculating insulation score get inconsistant results
#350 opened Mar 25, 2024 by jiangshan529 updated Oct 11, 2024
6
compartment strength score
#358 opened Jul 30, 2024 by IcyYeyangchen updated Jul 31, 2024
2
Get average interaction submatrices from pre established contact file
#359 opened Jul 30, 2024 by Lucas446 updated Jul 30, 2024
1
Pileup Plot Score
#355 opened Jul 6, 2024 by LucasMcNU updated Jul 6, 2024
1
Errors with chromosome_matrix() and load_contacts() function~
#351 opened Apr 9, 2024 by Miracle-Yao updated Apr 13, 2024
2
hic file load error
#336 opened Oct 8, 2023 by Chuan0518 updated Apr 10, 2024
2
Example in Tutorial page 42 or PE-SCAn perspective plot could not be reproduced due to error "mfrow" has the wrong length
#352 opened Apr 10, 2024 by usernicai updated Apr 10, 2024
centromeres setting
#342 opened Jan 18, 2024 by tan5251 updated Apr 6, 2024
1
list of loops in hic_matrixplot
#329 opened Jun 5, 2023 by Guanchen-Li updated Mar 13, 2024
3
ARA and pyramid plots issues
#344 opened Feb 20, 2024 by BERICP01 updated Mar 13, 2024
1
HiCExplorer final mcool file load in GENOVA
#346 opened Mar 11, 2024 by usernicai updated Mar 13, 2024
1
Memory footprint in Rstudio
#343 opened Jan 26, 2024 by LucasMcNU updated Feb 26, 2024
6
Disruption after load files
#339 opened Oct 24, 2023 by ccmeth updated Jan 26, 2024
8
how to create CS_discovery objsect from extrenal compartment results?
#341 opened Jan 18, 2024 by tan5251 updated Jan 18, 2024
3
compartment_score
#319 opened Feb 21, 2023 by knight-hzj updated Dec 22, 2023
4
Question: Plot relative contact frequencies stratified by distance for a limited region?
#338 opened Oct 19, 2023 by kalavattam updated Oct 19, 2023
When I used loops obtained at a 50Kb resolution and a 50Kb matrices to create the APA plot, I obtained abnormal results.
#337 opened Oct 17, 2023 by Chuan0518 updated Oct 17, 2023
2
Importing data from .hic and pyramid plot
#335 opened Aug 1, 2023 by ionas23 updated Aug 1, 2023
2
ProTip! Follow long discussions with comments:>50.