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isdir
I'm getting the following error when trying to precompile GeoIO on a cluster with many users:
ERROR: LoadError: SystemError: getgrgid: Numerical result out of range Stacktrace: [1] systemerror(p::Symbol, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:176 [2] systemerror @ ./error.jl:175 [inlined] [3] FilePathsBase.Group(gid::UInt64) @ FilePathsBase ~/.julia/packages/FilePathsBase/Laclt/src/libc.jl:125 [4] Status @ ~/.julia/packages/FilePathsBase/Laclt/src/status.jl:21 [inlined] [5] stat(fp::FilePathsBase.PosixPath) @ FilePathsBase ~/.julia/packages/FilePathsBase/Laclt/src/system.jl:54 [6] mode @ ~/.julia/packages/FilePathsBase/Laclt/src/system.jl:68 [inlined] [7] isdir @ ~/.julia/packages/FilePathsBase/Laclt/src/system.jl:96 [inlined] [8] Parquet2.FileManager(p::FilePathsBase.PosixPath, opts::Parquet2.ReadOptions) @ Parquet2 ~/.julia/packages/Parquet2/R3pbE/src/files.jl:127 [9] Parquet2.Dataset(p::FilePathsBase.PosixPath; kw::@Kwargs{}) @ Parquet2 ~/.julia/packages/Parquet2/R3pbE/src/dataset.jl:112 [10] Parquet2.Dataset(p::FilePathsBase.PosixPath) @ Parquet2 ~/.julia/packages/Parquet2/R3pbE/src/dataset.jl:110 [11] Parquet2.Dataset(p::String; kw::@Kwargs{}) @ Parquet2 ~/.julia/packages/Parquet2/R3pbE/src/dataset.jl:116 [12] Dataset @ ~/.julia/packages/Parquet2/R3pbE/src/dataset.jl:116 [inlined] [13] read(::GeoParquet.Parquet2Driver, fn::String; kwargs::@Kwargs{}) @ GeoParquet ~/.julia/packages/GeoParquet/lUyaD/src/io.jl:50 [14] read @ ~/.julia/packages/GeoParquet/lUyaD/src/io.jl:49 [inlined] [15] read(fn::String; driver::Nothing, kwargs::@Kwargs{}) @ GeoParquet ~/.julia/packages/GeoParquet/lUyaD/src/io.jl:69 [16] read @ ~/.julia/packages/GeoParquet/lUyaD/src/io.jl:66 [inlined] [17] load(fname::String; repair::Bool, layer::Int64, lenunit::Nothing, numbertype::Type, kwargs::@Kwargs{}) @ GeoIO ~/.julia/packages/GeoIO/29FWh/src/load.jl:156 [18] load(fname::String) @ GeoIO ~/.julia/packages/GeoIO/29FWh/src/load.jl:81 [19] macro expansion @ ~/.julia/packages/GeoIO/29FWh/src/precompile.jl:12 [inlined] [20] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [21] macro expansion @ ~/.julia/packages/GeoIO/29FWh/src/precompile.jl:5 [inlined] [22] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [23] top-level scope @ ~/.julia/packages/GeoIO/29FWh/src/precompile.jl:139 [24] include(mod::Module, _path::String) @ Base ./Base.jl:557 [25] include(x::String) @ GeoIO ~/.julia/packages/GeoIO/29FWh/src/GeoIO.jl:5 [26] top-level scope @ ~/.julia/packages/GeoIO/29FWh/src/GeoIO.jl:139 [27] include @ ./Base.jl:557 [inlined] [28] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [29] top-level scope @ stdin:6 in expression starting at /home/kit/stud/uwgir/.julia/packages/GeoIO/29FWh/src/precompile.jl:3 in expression starting at /home/kit/stud/uwgir/.julia/packages/GeoIO/29FWh/src/GeoIO.jl:5 in expression starting at stdin:
This seems to be a general issue with getgrgid (see also dun/munge#16), but getgrgid should probably not be called at all for a simple isdir query.
getgrgid
The culprit here is that constructing a Status struct tries to create a Group which in turn calls getgrgid. Any reason for
Status
Group
FilePathsBase.jl/src/system.jl
Line 97 in 8b18030
isdir(string(fp))
The text was updated successfully, but these errors were encountered:
Status: only create User and Group when requested
User
ada2fe5
Potential fix for rofinn#182
Successfully merging a pull request may close this issue.
I'm getting the following error when trying to precompile GeoIO on a cluster with many users:
This seems to be a general issue with
getgrgid
(see also dun/munge#16), butgetgrgid
should probably not be called at all for a simpleisdir
query.The culprit here is that constructing a
Status
struct tries to create aGroup
which in turn callsgetgrgid
. Any reason forFilePathsBase.jl/src/system.jl
Line 97 in 8b18030
isdir(string(fp))
which would avoid the issue?The text was updated successfully, but these errors were encountered: