Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Dec 18, 2020

• adding DEGs for Jasons data

  

  rpolicastro

  committed
  b8162f5

  Copy full SHA for b8162f5

Commits on Dec 16, 2020

• adding an example count matrix

  

  rpolicastro

  committed
  a60b5a6

  Copy full SHA for a60b5a6

Commits on Dec 9, 2020

• adding an example DESeq2 dataset

  

  rpolicastro

  committed
  19e98dd

  Copy full SHA for 19e98dd

Commits on Nov 6, 2020

• finished rmarkdown for chipseq analysis

  

  rpolicastro

  committed
  af6326a

  Copy full SHA for af6326a

Commits on Nov 3, 2020

• peak calling and heatmap generation

  

  rpolicastro

  committed
  5109855

  Copy full SHA for 5109855

• adding alignment step to chipseq example

  

  rpolicastro

  committed
  3537dda

  Copy full SHA for 3537dda

Commits on Nov 2, 2020

• started the chipseq workflow script

  

  rpolicastro

  committed
  df2699f

  Copy full SHA for df2699f

Commits on Oct 28, 2020

• adding bash practice file

  

  rpolicastro

  committed
  71deed9

  Copy full SHA for 71deed9

• redoing analysis

  

  rpolicastro

  committed
  e316a44

  Copy full SHA for e316a44

Commits on Oct 16, 2020

• moving assembly and annotation links to variables

  

  rpolicastro

  committed
  0296027

  Copy full SHA for 0296027

• adding feature counting

  

  rpolicastro

  committed
  8bbed0e

  Copy full SHA for 8bbed0e

• adding STAR genome indexing and read alignment

  

  rpolicastro

  committed
  66f100a

  Copy full SHA for 66f100a

Commits on Oct 14, 2020

• updating the seqtk code for easier interpretation

  

  rpolicastro

  committed
  ae95e0e

  Copy full SHA for ae95e0e

• adding fastqc reports

  

  rpolicastro

  committed
  9a5ada7

  Copy full SHA for 9a5ada7

• updating sampled files

  

  rpolicastro

  committed
  f724800

  Copy full SHA for f724800

• example workflow up until sampled fastq files

  

  rpolicastro

  committed
  b524aee

  Copy full SHA for b524aee

Commits on Oct 7, 2020

• adding some example genomics files

  

  rpolicastro

  committed
  d02b559

  Copy full SHA for d02b559

Commits on Oct 2, 2020

• adding example table

  

  rpolicastro

  committed
  fa35bbc

  Copy full SHA for fa35bbc

Commits on Aug 24, 2020

• updating first lecture

  

  rpolicastro

  committed
  c7a3051

  Copy full SHA for c7a3051

Commits on Aug 18, 2020

• rendering lecture_1 in md

  

  rpolicastro

  committed
  92e2e4f

  Copy full SHA for 92e2e4f

• adding first lecture of base_R

  

  rpolicastro

  committed
  c4fc01b

  Copy full SHA for c4fc01b

• Initial commit

  rpolicastro

  authored
  83fb5fc

  Copy full SHA for 83fb5fc