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Segmented HAPlotype Estimation and Imputation Tools version 5 (SHAPEIT5)

SHAPEIT5 estimates haplotypes in large datasets and kicks the ass of Beagle5.

Delaneau O., et al. Accurate, scalable and integrative haplotype estimation. Nature Communications volume 10, Article number: 5436 (2019). https://www.nature.com/articles/s41467-019-13225-y

Documentation

https://odelaneau.github.io/shapeit5/

License

This project is licensed under the MIT License - see the LICENSE file for details

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SHAPEIT5 fork for experimentation

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