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Commits on Apr 16, 2024

• Merge pull request #194 from gekkonid/py311

  Show description for 2929e4a
  ryanlayer

  authored
  2929e4a

Commits on Jan 9, 2024

• Update samplot/samplot.py

  Show description for 8e5f9c9
  

  kdm9

  and

  pontushojer

  authored
  8e5f9c9

Commits on Jan 8, 2024

• fixes for python 3.11

  Show description for 444f3bd
  kdm9

  authored
  444f3bd

Commits on Dec 2, 2023

• Merge pull request #193 from pontushojer/warn-missing-samples

  Show description for dfc8609
  ryanlayer

  authored
  dfc8609

• Merge pull request #192 from pontushojer/fix-189

  Show description for 09aab3d
  ryanlayer

  authored
  09aab3d

• Merge pull request #191 from pontushojer/fix-188

  Show description for 85fa8a6
  ryanlayer

  authored
  85fa8a6

Commits on Nov 27, 2023

• warn if missing samples in BAMs or VCF

  pontushojer

  committed
  b0e450a

Commits on Nov 24, 2023

• enable dysgu translocations

  pontushojer

  authored
  ef7a294

Commits on Nov 22, 2023

• temporary fix #189 by limiting matplotlib to <3.7

  pontushojer

  authored
  514cc40

• fix bug where 2nd breakpoint position not in INFO/END for interchromosomal translocations

  pontushojer

  authored
  55a85fb

Commits on Nov 20, 2023

• fix missing space in template for translocations

  pontushojer

  authored
  b3a2f7a

Commits on Nov 13, 2023

• Add parenthesis

  pontushojer

  authored
  2633777

Commits on Nov 10, 2023

• fix translocation handling and add log messages

  pontushojer

  authored
  ccefb81

Commits on Aug 31, 2023

• Merge pull request #184 from pontushojer/fix-tests

  Show description for f4490b2
  ryanlayer

  authored
  f4490b2

Commits on May 29, 2023

• Remove np.int depreciated in numpy 1.24.0

  pontushojer

  committed
  44d8685

Commits on May 28, 2023

• Merge pull request #183 from pontushojer/jitter-long

  Show description for db2ba62
  ryanlayer

  authored
  db2ba62

• Merge pull request #182 from pontushojer/fix-171

  Show description for bb24f36
  ryanlayer

  authored
  bb24f36

• Merge pull request #179 from pontushojer/coverage-speedup

  Show description for dbf629f
  ryanlayer

  authored
  dbf629f

• Merge pull request #178 from pontushojer/variants-stats

  Show description for 011c793
  ryanlayer

  authored
  011c793

• Merge pull request #177 from pontushojer/master

  Show description for d47574f
  ryanlayer

  authored
  d47574f

• Use same offset at both ends of bent line and make the line bends up for large jitter_bounds.

  pontushojer

  committed
  202b103

• simplify curr_max_insert_size update

  pontushojer

  committed
  575dc9f

• Enable --jitter for long reads

  pontushojer

  committed
  ee99ec0

• fix Missing legend (?) #171. Only include legends for read types that appear in the plot.

  pontushojer

  committed
  fa357bd

• fix Missing legend (?) #171. Only include legends for read types that appear in the plot.

  pontushojer

  committed
  0bed14c

Commits on May 16, 2023

• speed up read coverage collection

  pontushojer

  committed
  a5a4933

Commits on May 15, 2023

• add info about how many variants are filtered out.

  pontushojer

  committed
  ceb48c6

• fix string formatting

  pontushojer

  committed
  80b4f2f

• Exit if no samples in VCF match sample in BAMs or those specified using --sample_ids.

  pontushojer

  committed
  12aad6f

• Merge branch 'master' of https://github.com/pontushojer/samplot

  pontushojer

  committed
  f030508

• use logger for messages

  pontushojer

  committed
  4a5505f

Commits on Nov 21, 2022

• Merge pull request #169 from pontushojer/missing-img-error

  Show description for 70cad15
  mchowdh200

  authored
  70cad15

Commits on Nov 10, 2022

• Show a popup error when an image is missing

  pontushojer

  committed
  e2180f0

Commits on Nov 6, 2022

• fix tests and chr prefix strip (#168)

  Show description for 16560c1
  jbelyeu

  authored
  16560c1

Commits on May 12, 2022

• Merge pull request #157 from pontushojer/names-missing

  Show description for f3968cf
  ryanlayer

  authored
  f3968cf

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