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Manual.4tc
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Manual.4tc
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\expandafter\ifx\csname doTocEntry\endcsname\relax \expandafter\endinput\fi
\doTocEntry\toclikesection{}{\csname a:TocLink\endcsname{1}{x1-1000}{QQ2-1-1}{Contents}}{3}\relax
\doTocEntry\tocsection{1}{\csname a:TocLink\endcsname{1}{x1-20001}{QQ2-1-2}{Overview}}{7}\relax
\doTocEntry\tocsection{2}{\csname a:TocLink\endcsname{1}{x1-30002}{QQ2-1-3}{Licence}}{8}\relax
\doTocEntry\tocsection{3}{\csname a:TocLink\endcsname{1}{x1-40003}{QQ2-1-4}{Prerequisites}}{8}\relax
\doTocEntry\tocsection{4}{\csname a:TocLink\endcsname{1}{x1-50004}{QQ2-1-5}{Installation}}{9}\relax
\doTocEntry\tocsubsection{4.1}{\csname a:TocLink\endcsname{1}{x1-60004.1}{QQ2-1-6}{Command-line}}{9}\relax
\doTocEntry\tocsubsection{4.2}{\csname a:TocLink\endcsname{1}{x1-70004.2}{QQ2-1-7}{Interface}}{10}\relax
\doTocEntry\tocsection{5}{\csname a:TocLink\endcsname{1}{x1-80005}{QQ2-1-8}{Starting}}{15}\relax
\doTocEntry\tocsection{6}{\csname a:TocLink\endcsname{1}{x1-90006}{QQ2-1-9}{Toolbar}}{18}\relax
\doTocEntry\tocsubsection{6.1}{\csname a:TocLink\endcsname{1}{x1-100006.1}{QQ2-1-10}{Save Default Configure}}{18}\relax
\doTocEntry\tocsubsection{6.2}{\csname a:TocLink\endcsname{1}{x1-110006.2}{QQ2-1-11}{Manual}}{21}\relax
\doTocEntry\tocsubsection{6.3}{\csname a:TocLink\endcsname{1}{x1-120006.3}{QQ2-1-12}{Load Configure}}{24}\relax
\doTocEntry\tocsubsection{6.4}{\csname a:TocLink\endcsname{1}{x1-130006.4}{QQ2-1-13}{Save Configure}}{27}\relax
\doTocEntry\tocsubsection{6.5}{\csname a:TocLink\endcsname{1}{x1-140006.5}{QQ2-1-14}{Run}}{30}\relax
\doTocEntry\tocsubsection{6.6}{\csname a:TocLink\endcsname{1}{x1-150006.6}{QQ2-1-15}{Refresh}}{33}\relax
\doTocEntry\tocsubsection{6.7}{\csname a:TocLink\endcsname{1}{x1-160006.7}{QQ2-1-16}{Stop}}{36}\relax
\doTocEntry\tocsection{7}{\csname a:TocLink\endcsname{1}{x1-170007}{QQ2-1-17}{Input Format}}{39}\relax
\doTocEntry\tocsubsection{7.1}{\csname a:TocLink\endcsname{1}{x1-180007.1}{QQ2-1-18}{Brain Image}}{39}\relax
\doTocEntry\tocsubsection{7.2}{\csname a:TocLink\endcsname{1}{x1-190007.2}{QQ2-1-19}{Network Matrix}}{42}\relax
\doTocEntry\tocsection{8}{\csname a:TocLink\endcsname{1}{x1-200008}{QQ2-1-20}{Network Construction}}{45}\relax
\doTocEntry\tocsubsection{8.1}{\csname a:TocLink\endcsname{1}{x1-210008.1}{QQ2-1-21}{DICOM to NIfTI}}{45}\relax
\doTocEntry\tocsubsection{8.2}{\csname a:TocLink\endcsname{1}{x1-220008.2}{QQ2-1-22}{Delete Images}}{48}\relax
\doTocEntry\tocsubsection{8.3}{\csname a:TocLink\endcsname{1}{x1-230008.3}{QQ2-1-23}{Slice Timing}}{51}\relax
\doTocEntry\tocsubsection{8.4}{\csname a:TocLink\endcsname{1}{x1-240008.4}{QQ2-1-24}{Realign}}{54}\relax
\doTocEntry\tocsubsection{8.5}{\csname a:TocLink\endcsname{1}{x1-250008.5}{QQ2-1-25}{Normalize EPI}}{59}\relax
\doTocEntry\tocsubsection{8.6}{\csname a:TocLink\endcsname{1}{x1-260008.6}{QQ2-1-26}{Normalize T1}}{62}\relax
\doTocEntry\tocsubsection{8.7}{\csname a:TocLink\endcsname{1}{x1-270008.7}{QQ2-1-27}{Smooth}}{67}\relax
\doTocEntry\tocsubsection{8.8}{\csname a:TocLink\endcsname{1}{x1-280008.8}{QQ2-1-28}{Detrend}}{70}\relax
\doTocEntry\tocsubsection{8.9}{\csname a:TocLink\endcsname{1}{x1-290008.9}{QQ2-1-29}{Filter}}{73}\relax
\doTocEntry\tocsubsection{8.10}{\csname a:TocLink\endcsname{1}{x1-300008.10}{QQ2-1-30}{Covariates Regression}}{76}\relax
\doTocEntry\tocsubsection{8.11}{\csname a:TocLink\endcsname{1}{x1-310008.11}{QQ2-1-31}{Voxel-based Degree}}{80}\relax
\doTocEntry\tocsubsection{8.12}{\csname a:TocLink\endcsname{1}{x1-320008.12}{QQ2-1-32}{Functional Connectivity Matrix}}{85}\relax
\doTocEntry\tocsection{9}{\csname a:TocLink\endcsname{1}{x1-330009}{QQ2-1-33}{Network Analysis}}{88}\relax
\doTocEntry\tocsubsection{9.1}{\csname a:TocLink\endcsname{1}{x1-340009.1}{QQ2-1-34}{Network Configurations}}{88}\relax
\doTocEntry\tocsubsection{9.2}{\csname a:TocLink\endcsname{1}{x1-350009.2}{QQ2-1-35}{Network - Small World}}{91}\relax
\doTocEntry\tocsubsection{9.3}{\csname a:TocLink\endcsname{1}{x1-360009.3}{QQ2-1-36}{Network - Efficiency}}{92}\relax
\doTocEntry\tocsubsection{9.4}{\csname a:TocLink\endcsname{1}{x1-370009.4}{QQ2-1-37}{Network - Rich Club}}{92}\relax
\doTocEntry\tocsubsection{9.5}{\csname a:TocLink\endcsname{1}{x1-380009.5}{QQ2-1-38}{Network - Modularity}}{92}\relax
\doTocEntry\tocsubsection{9.6}{\csname a:TocLink\endcsname{1}{x1-390009.6}{QQ2-1-39}{Network - Assortativity}}{92}\relax
\doTocEntry\tocsubsection{9.7}{\csname a:TocLink\endcsname{1}{x1-400009.7}{QQ2-1-40}{Network - Hierarchy}}{92}\relax
\doTocEntry\tocsubsection{9.8}{\csname a:TocLink\endcsname{1}{x1-410009.8}{QQ2-1-41}{Network - Synchronization}}{92}\relax
\doTocEntry\tocsubsection{9.9}{\csname a:TocLink\endcsname{1}{x1-420009.9}{QQ2-1-42}{Node - Degree}}{93}\relax
\doTocEntry\tocsubsection{9.10}{\csname a:TocLink\endcsname{1}{x1-430009.10}{QQ2-1-43}{Node - Efficiency}}{93}\relax
\doTocEntry\tocsubsection{9.11}{\csname a:TocLink\endcsname{1}{x1-440009.11}{QQ2-1-44}{Node - Betweenness}}{93}\relax
\doTocEntry\tocsection{10}{\csname a:TocLink\endcsname{1}{x1-4500010}{QQ2-1-45}{Network Analysis Results}}{93}\relax
\doTocEntry\tocsubsection{10.1}{\csname a:TocLink\endcsname{1}{x1-4600010.1}{QQ2-1-46}{Individual Results}}{98}\relax
\doTocEntry\tocsubsubsection{10.1.1}{\csname a:TocLink\endcsname{1}{x1-4700010.1.1}{QQ2-1-47}{Network - Small World}}{98}\relax
\doTocEntry\tocsubsubsection{10.1.2}{\csname a:TocLink\endcsname{1}{x1-4800010.1.2}{QQ2-1-48}{Network - Efficiency}}{107}\relax
\doTocEntry\tocsubsubsection{10.1.3}{\csname a:TocLink\endcsname{1}{x1-4900010.1.3}{QQ2-1-49}{Network - Rich Club}}{116}\relax
\doTocEntry\tocsubsubsection{10.1.4}{\csname a:TocLink\endcsname{1}{x1-5000010.1.4}{QQ2-1-50}{Network - Modularity}}{119}\relax
\doTocEntry\tocsubsubsection{10.1.5}{\csname a:TocLink\endcsname{1}{x1-5100010.1.5}{QQ2-1-51}{Network - Assortativity}}{123}\relax
\doTocEntry\tocsubsubsection{10.1.6}{\csname a:TocLink\endcsname{1}{x1-5200010.1.6}{QQ2-1-52}{Network - Hierarchy}}{126}\relax
\doTocEntry\tocsubsubsection{10.1.7}{\csname a:TocLink\endcsname{1}{x1-5300010.1.7}{QQ2-1-53}{Network - Synchronization}}{129}\relax
\doTocEntry\tocsubsubsection{10.1.8}{\csname a:TocLink\endcsname{1}{x1-5400010.1.8}{QQ2-1-54}{Node - Degree}}{132}\relax
\doTocEntry\tocsubsubsection{10.1.9}{\csname a:TocLink\endcsname{1}{x1-5500010.1.9}{QQ2-1-55}{Node - Efficiency}}{135}\relax
\doTocEntry\tocsubsubsection{10.1.10}{\csname a:TocLink\endcsname{1}{x1-5600010.1.10}{QQ2-1-56}{Node - Betweenness}}{138}\relax
\doTocEntry\tocsubsection{10.2}{\csname a:TocLink\endcsname{1}{x1-5700010.2}{QQ2-1-57}{Integrated Results}}{141}\relax
\doTocEntry\tocsubsubsection{10.2.1}{\csname a:TocLink\endcsname{1}{x1-5800010.2.1}{QQ2-1-58}{Network - Small World}}{141}\relax
\doTocEntry\tocsubsubsection{10.2.2}{\csname a:TocLink\endcsname{1}{x1-5900010.2.2}{QQ2-1-59}{Network - Efficiency}}{150}\relax
\doTocEntry\tocsubsubsection{10.2.3}{\csname a:TocLink\endcsname{1}{x1-6000010.2.3}{QQ2-1-60}{Network - Rich Club}}{159}\relax
\doTocEntry\tocsubsubsection{10.2.4}{\csname a:TocLink\endcsname{1}{x1-6100010.2.4}{QQ2-1-61}{Network - Modularity}}{164}\relax
\doTocEntry\tocsubsubsection{10.2.5}{\csname a:TocLink\endcsname{1}{x1-6200010.2.5}{QQ2-1-62}{Network - Assortativity}}{170}\relax
\doTocEntry\tocsubsubsection{10.2.6}{\csname a:TocLink\endcsname{1}{x1-6300010.2.6}{QQ2-1-63}{Network - Hierarchy}}{173}\relax
\doTocEntry\tocsubsubsection{10.2.7}{\csname a:TocLink\endcsname{1}{x1-6400010.2.7}{QQ2-1-64}{Network - Synchronization}}{176}\relax
\doTocEntry\tocsubsubsection{10.2.8}{\csname a:TocLink\endcsname{1}{x1-6500010.2.8}{QQ2-1-65}{Node - Degree}}{179}\relax
\doTocEntry\tocsubsubsection{10.2.9}{\csname a:TocLink\endcsname{1}{x1-6600010.2.9}{QQ2-1-66}{Node - Efficiency}}{185}\relax
\doTocEntry\tocsubsubsection{10.2.10}{\csname a:TocLink\endcsname{1}{x1-6700010.2.10}{QQ2-1-67}{Node - Betweenness}}{190}\relax
\doTocEntry\tocsection{11}{\csname a:TocLink\endcsname{1}{x1-6800011}{QQ2-1-68}{Network Comparison}}{195}\relax
\doTocEntry\tocsubsection{11.1}{\csname a:TocLink\endcsname{1}{x1-6900011.1}{QQ2-1-69}{Network and Node}}{195}\relax
\doTocEntry\tocsubsubsection{11.1.1}{\csname a:TocLink\endcsname{1}{x1-7000011.1.1}{QQ2-1-70}{One Sample T-test}}{196}\relax
\doTocEntry\tocsubsubsection{11.1.2}{\csname a:TocLink\endcsname{1}{x1-7100011.1.2}{QQ2-1-71}{Two Sample T-test}}{200}\relax
\doTocEntry\tocsubsubsection{11.1.3}{\csname a:TocLink\endcsname{1}{x1-7200011.1.3}{QQ2-1-72}{Paired T-test}}{204}\relax
\doTocEntry\tocsubsubsection{11.1.4}{\csname a:TocLink\endcsname{1}{x1-7300011.1.4}{QQ2-1-73}{One-way ANCOVA}}{208}\relax
\doTocEntry\tocsubsubsection{11.1.5}{\csname a:TocLink\endcsname{1}{x1-7400011.1.5}{QQ2-1-74}{One-way ANCOVA (Repeated Measures)}}{212}\relax
\doTocEntry\tocsubsubsection{11.1.6}{\csname a:TocLink\endcsname{1}{x1-7500011.1.6}{QQ2-1-75}{Correlation Analysis}}{216}\relax
\doTocEntry\tocsubsubsection{11.1.7}{\csname a:TocLink\endcsname{1}{x1-7600011.1.7}{QQ2-1-76}{Output}}{220}\relax
\doTocEntry\tocsubsection{11.2}{\csname a:TocLink\endcsname{1}{x1-7700011.2}{QQ2-1-77}{Edge}}{223}\relax
\doTocEntry\tocsubsubsection{11.2.1}{\csname a:TocLink\endcsname{1}{x1-7800011.2.1}{QQ2-1-78}{Averaged (Functional)}}{223}\relax
\doTocEntry\tocsubsubsection{11.2.2}{\csname a:TocLink\endcsname{1}{x1-7900011.2.2}{QQ2-1-79}{Backbone (Structural)}}{228}\relax
\doTocEntry\tocsubsubsection{11.2.3}{\csname a:TocLink\endcsname{1}{x1-8000011.2.3}{QQ2-1-80}{One-sample T-test}}{233}\relax
\doTocEntry\tocsubsubsection{11.2.4}{\csname a:TocLink\endcsname{1}{x1-8100011.2.4}{QQ2-1-81}{Two-sample T-test}}{239}\relax