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circle.yml
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machine:
environment:
# We need to set this variable to let Anaconda take precedence
PATH: "/home/ubuntu/miniconda/envs/circleenv/bin:/home/ubuntu/miniconda/bin:$PATH"
DISPLAY: ":99.0"
dependencies:
cache_directories:
- "~/miniconda"
- "~/.mne"
- "~/mne_data/MNE-sample-data"
- "~/mne_data/MNE-testing-data"
- "~/mne_data/MNE-misc-data"
- "~/mne_data/MNE-spm-face"
- "~/mne_data/MNE-somato-data"
- "~/mne_data/MNE-brainstorm-data"
- "~/mne_data/MEGSIM"
- "~/mne_data/MNE-eegbci-data"
- "~/mne-tools.github.io"
# Various dependencies
pre:
# Get a running Python
- cd ~;
# Disable pyenv (no cleaner way provided by CircleCI as it prepends pyenv version to PATH)
- rm -rf ~/.pyenv;
- rm -rf ~/virtualenvs;
# Get Anaconda and conda-based requirements
- >
if [ ! -d "/home/ubuntu/miniconda" ]; then
echo "Setting up conda";
wget -q http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O ~/miniconda.sh;
chmod +x ~/miniconda.sh;
~/miniconda.sh -b -p /home/ubuntu/miniconda;
conda update --yes --quiet conda;
conda create -n circleenv --yes pip python=2.7 pip;
sed -i "s/ENABLE_USER_SITE = .*/ENABLE_USER_SITE = False/g" /home/ubuntu/miniconda/envs/circleenv/lib/python2.7/site.py;
else
echo "Conda already set up.";
fi
- conda install -n circleenv --yes numpy scipy scikit-learn mayavi matplotlib sphinx pillow six IPython pandas;
- ls -al /home/ubuntu/miniconda;
- ls -al /home/ubuntu/miniconda/bin;
- echo $PATH;
- echo $CIRCLE_BRANCH
- which python;
- which pip;
- pip install --upgrade pyface;
- git clone https://github.com/sphinx-gallery/sphinx-gallery.git;
- cd sphinx-gallery && pip install -r requirements.txt && python setup.py develop;
- pip install sphinx_bootstrap_theme git+git://github.com/nipy/PySurfer.git nilearn neo numpydoc;
override:
# Figure out if we should run a full, pattern, or noplot version
- cd /home/ubuntu/mne-python && python setup.py develop;
- if ! git remote -v | grep upstream ; then git remote add upstream git://github.com/mne-tools/mne-python.git; fi;
- git fetch upstream;
- git branch -a;
- mkdir -p ~/mne_data;
- PATTERN="";
if [ "$CIRCLE_BRANCH" == "master" ] || [[ `git log -1 --pretty=%B` == *"[circle full]"* ]]; then
echo html_dev > build.txt;
elif [ "$CIRCLE_BRANCH" == "maint/0.13" ]; then
echo html_stable > build.txt;
else
FNAMES=$(git diff --name-only $CIRCLE_BRANCH $(git merge-base $CIRCLE_BRANCH upstream/master));
echo FNAMES="$FNAMES";
for FNAME in $FNAMES; do
if [[ `expr match $FNAME "\(tutorials\|examples\)/.*plot_.*\.py"` ]] ; then
echo "Checking example $FNAME ...";
PATTERN=`basename $FNAME`"\\|"$PATTERN;
if [[ $(cat $FNAME | grep -x ".*datasets.*sample.*" | wc -l) -gt 0 ]]; then
python -c "import mne; print(mne.datasets.sample.data_path(update_path=True))";
fi;
if [[ $(cat $FNAME | grep -x ".*datasets.*somato.*" | wc -l) -gt 0 ]]; then
python -c "import mne; print(mne.datasets.somato.data_path(update_path=True))";
fi;
if [[ $(cat $FNAME | grep -x ".*datasets.*eegbci.*" | wc -l) -gt 0 ]]; then
python -c "import mne; print(mne.datasets.eegbci.load_data(1, [6, 10, 14], update_path=True))";
fi;
if [[ $(cat $FNAME | grep -x ".*brainstorm.*bst_auditory.*" | wc -l) -gt 0 ]]; then
python -c "import mne; print(mne.datasets.brainstorm.bst_auditory.data_path(update_path=True))" --accept-brainstorm-license;
fi;
if [[ $(cat $FNAME | grep -x ".*brainstorm.*bst_raw.*" | wc -l) -gt 0 ]]; then
python -c "import mne; print(mne.datasets.brainstorm.bst_raw.data_path(update_path=True))" --accept-brainstorm-license;
fi;
if [[ $(cat $FNAME | grep -x ".*brainstorm.*bst_phantom_ctf.*" | wc -l) -gt 0 ]]; then
python -c "import mne; print(mne.datasets.brainstorm.bst_phantom_ctf.data_path(update_path=True))" --accept-brainstorm-license;
fi;
if [[ $(cat $FNAME | grep -x ".*brainstorm.*bst_phantom_elekta.*" | wc -l) -gt 0 ]]; then
python -c "import mne; print(mne.datasets.brainstorm.bst_phantom_elekta.data_path(update_path=True))" --accept-brainstorm-license;
fi;
if [[ $(cat $FNAME | grep -x ".*datasets.*megsim.*" | wc -l) -gt 0 ]]; then
python -c "import mne; print(mne.datasets.megsim.load_data(condition='visual', data_format='single-trial', data_type='simulation', update_path=True))";
python -c "import mne; print(mne.datasets.megsim.load_data(condition='visual', data_format='raw', data_type='experimental', update_path=True))";
fi;
fi;
done;
echo PATTERN="$PATTERN";
echo NEED_SAMPLE="$NEED_SAMPLE";
if [[ $PATTERN ]]; then
PATTERN="\(${PATTERN::-2}\)";
echo html_dev-pattern > build.txt;
else
echo html_dev-noplot > build.txt;
fi;
fi;
echo "$PATTERN" > pattern.txt;
- echo BUILD="$(cat build.txt)"
- ls -al ~/mne_data;
- if [[ $(cat build.txt) == "html_dev" ]] || [[ $(cat build.txt) == "html_stable" ]]; then
python -c "import mne; mne.datasets._download_all_example_data()";
fi;
- python -c "import mne; mne.sys_info()";
- >
if [ ! -d "/home/ubuntu/mne-tools.github.io" ]; then
cd .. && git clone https://github.com/mne-tools/mne-tools.github.io.git && cd mne-tools.github.io;
fi;
- /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render -noreset;
test:
override:
- if [[ $(cat build.txt) == "html_dev-noplot" ]]; then cd doc && make html_dev-noplot; elif [[ $(cat build.txt) == "html_dev-pattern" ]]; then cd doc && PATTERN=$(cat ../pattern.txt) make html_dev-pattern; else make test-doc; cd doc; make $(cat ../build.txt); fi:
timeout: 1500
general:
# branches:
# only:
# - master
# Open the doc to the API
artifacts:
- "doc/_build/html"
deployment:
production:
branch: master
commands:
- git config --global user.email "[email protected]"
- git config --global user.name "Circle Ci"
- cd ../mne-tools.github.io && git checkout master && git pull origin master
- cd doc/_build/html && cp -rf * ~/mne-tools.github.io/dev
- cd ../mne-tools.github.io && git add -A && git commit -m 'Automated update of dev docs.' && git push origin master
stable:
branch: maint/0.13
commands:
- git config --global user.email "[email protected]"
- git config --global user.name "Circle Ci"
- cd ../mne-tools.github.io && git checkout master && git pull origin master
- cd doc/_build/html_stable && cp -rf * ~/mne-tools.github.io/stable
- cd ../mne-tools.github.io && git add -A && git commit -m 'Automated update of stable docs.' && git push origin master